Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03097 ATGAACAGACCTACCTTCATTTTCATAATAGGAATTTGTATAGGCTTCGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTCGTAAGGAGAAGGAAGAAGCCCGCAGAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGTATGATTCTAACTCAACATTATCAGAGGGTGAGGAGTCACCTAGAACATCTGAGTGGAGTAACATGACTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAATGTCGGCATGCGGAATTCCCAAGTATTCTTACAAAGATATACAAAGGGATACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCGCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTCGGAAAAGGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATCCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGCATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAATGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA 1278 0.4194 MNRPTFIFIIGICIGFVVGIGLTLSIVHCLVRRRKKPAEVDKSISHRAVTIPVNVKGYDSNSTLSEGEESPRTSEWSNMTLWLENLRRSSAMSACGIPKYSYKDIQRDTSNFTTIIGNGAFGPVYKAQMATGGTVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKGREPMNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDGQLNGKYDVHNLNDMASLAFICVNEVSQSRPTMCEIVQALSQLCKRNGKNLGRTSSAAALKDVCIEVDQIETKDFTSTASTDILGRLHSR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03097 425 SUPERFAMILY Protein kinase-like (PK-like) 88 375 IPR011009 -
Vian1g03097 425 Gene3D Phosphorylase Kinase; domain 1 76 185 - -
Vian1g03097 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vian1g03097 425 Gene3D Transferase(Phosphotransferase) domain 1 186 399 - -
Vian1g03097 425 SMART serkin_6 110 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03097 425 CDD STKc_IRAK 116 378 - -
Vian1g03097 425 PANTHER OS01G0750732 PROTEIN 15 391 - -
Vian1g03097 425 Pfam Protein tyrosine and serine/threonine kinase 112 375 IPR001245 GO:0004672|GO:0006468
Vian1g03097 425 ProSiteProfiles Protein kinase domain profile. 110 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03097 425 FunFam calcium/calmodulin-regulated receptor-like kinase 1 186 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03097 Vian-Chr1 51562836 51567320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03097 24 375 Glycoside Hydrolase AT3G07070 38.251 5.90e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vian1g03097 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03097 - - gmx:100816549 660.603