Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03089 ATGGAAGTTGACCTGAGAACCATGGTTTTCAACGTTCTTCTACTCATGTTGTGGTCATTGCAGACTTGCTTCGCCATGATCAGTGACGCAGGTAGCATTGAATTCGACGGAGGATCGGAAGAAAGTGATCATGAGACATTGTTTGATCCATCATTTTGGTACAGTTTTAGCATTGGCTATGTCTGTTCAGCCAGTGGGATCATCTTTGCTTATATGTGGTTCTGTGTCCCTTGGGCGCAACTGAAGAAGACCAAGAGAAAGTTCATGTCTTCCAACGTTGGTAGGCATGATATACGTGCAATAAAGGCAAACCAAGTTCCCCAACTACTACTCTATCTGTTGTTGCTCAAGAAAGGAAACCAAGAGGTTTCTAGAGTACTGGACAAACTAAGATCGAGTATCAGCTTCATGGAACTGTGTAGAGCAACTGATTACTTCAACATGACCAATGTTATTGGGACAGGAAAGACAGGGACGGTGTACAAGGCCAAGCTTTCTAATGGCTCAAAAGTGGCAGTGAAGAGACTCTATGATTCCAAGTTATTTGAAACAAAGTTTGCCTTAGAAATCGGGATTCTACACAGATTCAAACATGGAAACTTAGTGGGTCTTCTTGGGTTTTGCACAGAGAGAAAGCAGAGGATCCTTGTTTATGAATTCATGCCAAATGGTAAACTCTCTGATTGGTTACATCCTTTGCAAAATGAAGCTTTTCCATTGGATTGGCCAATAAGGCTTAAAATAGCACTTGGGTTGGCTAGAGGTTTATCCTTTCTCCATGATTGTTGCAATTGGAAGATACTCCATTTTGGTATAAACTCGGAGCATGTTTTGCTTGATAAGAATTTTGAGCCCAAATTACGGAATTTCAGAAGTGCTGAACTCATGAAAGAAAGCCAGAAGAAGCTAGGGAAGAAGGATGTGTACGATTTTGGCGTTGTACTGATGGAGCTTATCACTGGAAAGAAGCACGTTGAAATGAGTATAGATTTTAAAGTCATTGATTCATCTTTATTGGGAAAAGGATTCGATGAGCAAATCTCTTGTCTGGTTAAGGTTGCAGTTGATTGCATTCAGTTGTCTCCACACCAGAGGCCAAGTATGCTTGACGTGTATAAATATATAGAAAGGTTATGGGAAGGATACGAAACTGATGACTGA 1161 0.4083 MEVDLRTMVFNVLLLMLWSLQTCFAMISDAGSIEFDGGSEESDHETLFDPSFWYSFSIGYVCSASGIIFAYMWFCVPWAQLKKTKRKFMSSNVGRHDIRAIKANQVPQLLLYLLLLKKGNQEVSRVLDKLRSSISFMELCRATDYFNMTNVIGTGKTGTVYKAKLSNGSKVAVKRLYDSKLFETKFALEIGILHRFKHGNLVGLLGFCTERKQRILVYEFMPNGKLSDWLHPLQNEAFPLDWPIRLKIALGLARGLSFLHDCCNWKILHFGINSEHVLLDKNFEPKLRNFRSAELMKESQKKLGKKDVYDFGVVLMELITGKKHVEMSIDFKVIDSSLLGKGFDEQISCLVKVAVDCIQLSPHQRPSMLDVYKYIERLWEGYETDD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03089 386 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 109 377 - -
Vian1g03089 386 SUPERFAMILY Protein kinase-like (PK-like) 127 375 IPR011009 -
Vian1g03089 386 Gene3D Transferase(Phosphotransferase) domain 1 304 385 - -
Vian1g03089 386 ProSiteProfiles Protein kinase domain profile. 146 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03089 386 Gene3D Transferase(Phosphotransferase) domain 1 221 303 - -
Vian1g03089 386 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Vian1g03089 386 Gene3D Phosphorylase Kinase; domain 1 114 220 - -
Vian1g03089 386 Pfam Protein kinase domain 148 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03089 Vian-Chr1 51421277 51422657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03089 135 386 Receptor kinase-like Gene Family AT4G33430 33.444 2.66e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian1g03089 Pkinase 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03089 - - vum:124845269 727.243