Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03088 ATGAGCACAGAAATGGGTTCTCAAATAAAGAGGGATATTTTCATCCATGTTTTCTTGTATTCTTTGCTAAGATCTCTAATGGTAGGTAATGGTGTTGAAAGCGACATCTCCTGCTTAATATCCATTAAGGATTCCTTAGAAGATCCTTTCAATTACTTATCAAGCTGGAACTTCGACAACAGAACCGAAGGTTTCATATGCAGTTTTGTGGGCGTTTTATGCTGGCATCCGGATGAGAATAAAGTGTTGGGTATCTCGCTGGAAAATATGGGGTTGAAGGGTGAGTTTCCACTGGGAATTAGGAATTGCTCGTCATTAACAGCCTTAAGCCTTTCAAATAATCACCTAACAGGACCCATCCCCTCGGATATATCCACCTTAATCCCTTATGCTACCTCCTTAGATCTCTCATATAACAAATTTAATGGGAGTATTCCACCTACTTTGGCTAACTGCACTTACCTCAATTCTCTTAGGCTTGATCACAACAAGTTAAGTGGTCACATCCCTCAAGAACTTGGTCAGCTTCCCCTGATCAAATCAGCTTCTTTTGCCAACAATCATCTATCAGGGTCGGTGCCTTTGTTCTTTCAAGACATATCTTCTGTTGATTACGCAAATAATGGAGAGCTTTGTGGTGGGCCTTTGCCACCGTGTTCATTGGACAGCTCACATGATTTCCCTCAATCGTTCAAGCGGGGTCTTGCCACAGGCTATGCTTTTTCAGTGACTTCTGTTATTGTCATTTACATGTCCTACTGTGCACCTTGGGAACAATCACACCATCAAAGGAACAAGCACCGGAAGAAGGCTAAAGAATTAGGAACAATTTTTTGGTCCATTGCTGGGAGAAAGACACGTACTCAAGCTCCTGCCGAACACGAATTGCAACCTCTGCAGTTGCAGGAGAAAGTCGTCAAAGAGAATTATACTGATAAAACATGTAGGCTAGGCACAGTAGCTTTGGATGCAGGCAAACCAAAGGTGAAAAGGGACATCATTTTACTGGACCAAATTTCTGTAGTGACAGAGAGAATGAAGTCTACGATGAGGTTCAACGAAGTGAGAGATGCAACAGATTGCTTTTCCATAGACAAGGCCATTGGGATGGGGAAAATTGGAATAATGTACGAGGGAAGGCTACCCAATGGTTGGAACCTTGCCATTAAGAGACTATTCGATTCGAAACAATACAAGAGAGAGTTTCTTTTGGAAATAAGAATTCTGGGAAAGTACAGACACAGAAATATAGTTCCCTTACTTGGGTTCTGCGTAGAAGGAAAAGAAAGGATTTTGGTGTACCAGTTCATGTCAAATGGAAGGCTTTCAAAATGGTTGCATCCTTTAGAAGGTGAAGTTACATTGAAATGGCCTCAGAGGATCAAAGTAGCAATCGGGGTAGCAAGAGGCTTATCCTGGATCCACCACATATGCAACTTGCATGTTGTGCATCTCAATATAAGTTCGGAGTGTATCTTGCTTGATAAGAATTTTGAACCAAGACTGTCCAACTTTGGAAAGGCCAAGTTTGTGAATCCGAACATTGAAGACGGTGCAAACACAATGTTTTATGTGAGTGATGGGAAGAAGGACGTGTATGACTTTGGTAGTTTGCTATTTGAGCTAATCACAGGGAAAACATTGAAGGAGTTGTCGTGTTCATTCAGTACTGCAACTAACCTAGCTGGAAATCCTTCAAACTTTGTTAACGCAATTGATGAATCTCTGATGGGGGAAGGTTTGGAAAACGATGTGTACACTCTCATCAAAGTTGCATGCAAGTGTGTTCGACCATTCGCAGATGAAAGGCCAACGATGCTTGAAGTTTACGACACTATGAAGGATATATGGGGTGAAGGACATTAA 1866 0.4169 MSTEMGSQIKRDIFIHVFLYSLLRSLMVGNGVESDISCLISIKDSLEDPFNYLSSWNFDNRTEGFICSFVGVLCWHPDENKVLGISLENMGLKGEFPLGIRNCSSLTALSLSNNHLTGPIPSDISTLIPYATSLDLSYNKFNGSIPPTLANCTYLNSLRLDHNKLSGHIPQELGQLPLIKSASFANNHLSGSVPLFFQDISSVDYANNGELCGGPLPPCSLDSSHDFPQSFKRGLATGYAFSVTSVIVIYMSYCAPWEQSHHQRNKHRKKAKELGTIFWSIAGRKTRTQAPAEHELQPLQLQEKVVKENYTDKTCRLGTVALDAGKPKVKRDIILLDQISVVTERMKSTMRFNEVRDATDCFSIDKAIGMGKIGIMYEGRLPNGWNLAIKRLFDSKQYKREFLLEIRILGKYRHRNIVPLLGFCVEGKERILVYQFMSNGRLSKWLHPLEGEVTLKWPQRIKVAIGVARGLSWIHHICNLHVVHLNISSECILLDKNFEPRLSNFGKAKFVNPNIEDGANTMFYVSDGKKDVYDFGSLLFELITGKTLKELSCSFSTATNLAGNPSNFVNAIDESLMGEGLENDVYTLIKVACKCVRPFADERPTMLEVYDTMKDIWGEGH 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03088 621 ProSiteProfiles Protein kinase domain profile. 362 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03088 621 SUPERFAMILY Protein kinase-like (PK-like) 344 611 IPR011009 -
Vian1g03088 621 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Vian1g03088 621 FunFam Nuclear pore complex protein NUP107 32 195 - -
Vian1g03088 621 SUPERFAMILY L domain-like 33 208 - -
Vian1g03088 621 Gene3D Transferase(Phosphotransferase) domain 1 437 619 - -
Vian1g03088 621 Gene3D Phosphorylase Kinase; domain 1 328 436 - -
Vian1g03088 621 Gene3D Ribonuclease Inhibitor 32 219 IPR032675 -
Vian1g03088 621 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 54 203 - -
Vian1g03088 621 Pfam Protein tyrosine and serine/threonine kinase 363 611 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03088 Vian-Chr1 51416298 51419395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03088 4 616 Receptor kinase-like Gene Family AT3G28450 33.176 3.34e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vian1g03088 PK_Tyr_Ser-Thr 8.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03088 - - gmx:102664092 887.871