Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03074 ATGATGGAGGACCCTAATTTGCTCCGTCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTTCAACAACACGCATTTACTTATCCAGACTTCAATCCCAAAGCATCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAAAAACATCAGCTGGAATCCCATCAAAAGTTCTGCTCAGACATCAGATGCACAATATGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTTCATTGGGATTAGTGAAGGCCAATGAGGAGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTTTCTCTCAGGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGATTGGAAGACGTTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGCGCTTCATTGCCTTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCCACTTGAAGCAATTGCAGGAGAAAGTAAAGGCTCTTGAGGAGGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTGTCCTATGATGTTAACAATTCTTCAGAATATGATGGTCCGTTATTTGAAGAAACAATTCCCGAAATTGAAGCAAGATTTTGTGGGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAATCTCCACCTGAAAGTCACCAACAGCAATGCCATGGCATTTGGGAGATGCGCCATTGATATGACAGTTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTCCGCTCAGCTTTTACATCTTCCATGTGA 987 0.4134 MMEDPNLLRQWHLSSIDDPNLLPIAAAFGETFQQHAFTYPDFNPKASMETTLMDIERPTKHHKNISWNPIKSSAQTSDAQYVSFPNLLSFMDSNHISSLGLVKANEEACPITNSTTSLDTFSQGILGNHNYLFKACQETKKIGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISHLKQLQEKVKALEEAQNMKKTVESVVIVKKSQLSYDVNNSSEYDGPLFEETIPEIEARFCGRNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTVIAQMDMEFCMGVKDVVRNLRSAFTSSM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03074 328 Pfam Helix-loop-helix DNA-binding domain 153 199 IPR011598 GO:0046983
Vian1g03074 328 Coils Coil 188 218 - -
Vian1g03074 328 Gene3D - 145 223 IPR036638 GO:0046983
Vian1g03074 328 PANTHER BHLH TRANSCRIPTION FACTOR 29 326 - -
Vian1g03074 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 213 IPR036638 GO:0046983
Vian1g03074 328 CDD bHLH_AtNAI1_like 149 224 - -
Vian1g03074 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Vian1g03074 328 SMART finulus 155 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03074 Vian-Chr1 51208443 51209970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03074 149 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.591 1.12e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g03074 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03074 - - vun:114179595 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03074 1 51208443 51209970 Vian1g03074 1 51208443 51209970 ECH
Vian1g03074 1 51208443 51209970 Vian6g01901 6 36263134 36265194 PCT