Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03068 ATGTTAGAGTCTTTAGCTTGGTGCCAAAGCTTTAAGGGATATGACCTTACCAAACAGAAGAGTCCGGGTTGCTCTCATGCTATTTCACGAGTTTATAGAAATTCTATTTTTATGCTTTATTCTGTTAACAAGAAAGTGCCGGTACTGCCACATGGTGCTAGTCATTGGATATTTCATGGGAGTTCTGTGTCAGAAAATTTCTTTAAAAAGCCTCCTCTCTATGCTCCTTTAAGTTCTGGTTGGAAAGGTTTGTATAGGCCGCGTTGGGAAAGGCTGCAAACAAATGTAGCCTATGATGTTGCTGGTGCTGTTGATGTAATCAATGATTTAGGATTGGACACTCTTACTTTCTTGGCTGTGACCGTCATAATTGTGCCTATGTTCAAGTCACTGAAAGCCAGTCCTATACTTGGCTTCTTTTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATTCTTTTCTTGCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTAAAAGCTCTTGCAAAGTATGCTTTTGGAATGGGATTGGCTCAGGTTTTACTGTCTACTTTAGCATTTACTGCTTTTGAGCTTCCTCCAAATGGAGCTGTTGGCACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGGTGAACATAAGGAGTGTCGATGAAGCTGTAGTGATTGGTGCTGCTTTGTCTTTGTCATCTTCTGCATTTGTTCTACAGCTTTTAGCAGAGAAAGGTGAGCTTCCAACAAGATTTGGTTCAGCAACTCTTGGAATACTTCTTCTGCAGGACTTAGCAGTTGTTCCTCTTTTAGTCATACTTCCTATACTAGAGAGCCAGAATATAACCGAGGGGAGTATTTGGCCTACGCTTGCTCAAGAAAGTTTAAAAGCTTTAGGTGGATTGGGTCTTCTTTCTCTTGGGGCAAAGTACATTCTCAGAAGAGTTTTTGAGGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACAATTGCTGGGACTTCTCTAGGCACACAGAATTTGGGCTTTAGTGACACGCTTGGGGCTTTTTTAGCTGGGGCTATTTTGGCAGAGACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTCCTTGGATTGTTTTTCCTAACTACGGGAACTTCAATTGACATGCAGCTCCTTTTACGAGAGTGGCCAAATGTACTTTCACTCTTGGGAGGTTTAATTGTTATAAAGACATTGATCATAACTGCAATTGGTCCTCGTGTTGGGCTTACTTTACAAGAAAGTGTAAGAATAGGATTGCTTCTATCCCAAGGAGGCGAATTTGGATTTGTTGTTTTCTCTTTAGCAAATAGGCTCGGGGTGCTTCCTCTTGAGCTCAACAAACTGCTCATAATTGTTGTTGTATTGTCGATGGCATTAACCCCATTTCTGAACGAAGCTGGAAGAAGGGCTGCTAGTTTTATAGAAGAAAAATCTGATACTGAGAATAGTGAGAAAGCTTTGGAGACTGTTAACTTCGATGCTCGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCCTGTCCAATCCATTAGCTTCAGGAGAAGGTGATGAAGTAGGATGGCCTTATGTAGCATTTGATGTGGACCCCAATGTAGTAAAGACAGCTAGAAAAATTGGCTTTCCTATAGTCTATGGGGATGGATCACGTCCTGATGTTCTTCAATCTGCTGGTGTCTCTTCTCCAAAAGCTTTTATGATTATGTACACTGGAAAGAAGAAGACAATTGATGCTGTTCAGAGGCTAAGATTGACATTTCCCACGATTCCAATCTATGCCAGAGCTCGTGATCTAAAGCATCTATTAGATCTGAAAAAATCAGGTGCAACAGATGCCATTTTGGAAAATGCAGAGACTAGCTTGCACCTGGGTTCTAAGCTGCTGAAAGGCCTTGGTGTGATGTCTGATGATGTAGCATTTTTGAGTCAACTTATAAGAGATTCCATGGAGCTCCAAGCACAAGAAGCGGTCAGCCAACCTGAAAATCGTGGATTGGATATTATGCAACCCCTGCAGGTGAAAGCTTCTGACTTGAGGGAAGCACGTGTTCCTGCGGCAATAACTTCACCAGAATCTGAATTATCAGAAATGAATCAGAAAGATCAAGCTTCATCACTTAGAAATCAAAGGGAAGTAGATCTTGAAGAACAAGAACATGAACTTAGTGAAGCTGTGAAATTAGAAGGAAATGGTGTTTTACTTAGCAAACAAATTAGTGAAGAAAGCGCTGAGGAGCCCTGA 2373 0.4151 MLESLAWCQSFKGYDLTKQKSPGCSHAISRVYRNSIFMLYSVNKKVPVLPHGASHWIFHGSSVSENFFKKPPLYAPLSSGWKGLYRPRWERLQTNVAYDVAGAVDVINDLGLDTLTFLAVTVIIVPMFKSLKASPILGFFCAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMGLAQVLLSTLAFTAFELPPNGAVGTKILEFLFHSRPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDLAVVPLLVILPILESQNITEGSIWPTLAQESLKALGGLGLLSLGAKYILRRVFEVVADTRSSEAFVALCLLTIAGTSLGTQNLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDMQLLLREWPNVLSLLGGLIVIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEEKSDTENSEKALETVNFDAREPVVILGFGQMGQVLANFLSNPLASGEGDEVGWPYVAFDVDPNVVKTARKIGFPIVYGDGSRPDVLQSAGVSSPKAFMIMYTGKKKTIDAVQRLRLTFPTIPIYARARDLKHLLDLKKSGATDAILENAETSLHLGSKLLKGLGVMSDDVAFLSQLIRDSMELQAQEAVSQPENRGLDIMQPLQVKASDLREARVPAAITSPESELSEMNQKDQASSLRNQREVDLEEQEHELSEAVKLEGNGVLLSKQISEESAEEP 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03068 790 Pfam TrkA-N domain 535 657 IPR003148 GO:0006813
Vian1g03068 790 MobiDBLite consensus disorder prediction 735 749 - -
Vian1g03068 790 ProSiteProfiles RCK N-terminal domain profile. 534 665 IPR003148 GO:0006813
Vian1g03068 790 FunFam K(+) efflux antiporter 3, chloroplastic 109 508 - -
Vian1g03068 790 Gene3D - 109 508 IPR038770 -
Vian1g03068 790 MobiDBLite consensus disorder prediction 730 770 - -
Vian1g03068 790 Pfam Sodium/hydrogen exchanger family 117 501 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vian1g03068 790 Gene3D - 534 703 - -
Vian1g03068 790 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 533 676 IPR036291 -
Vian1g03068 790 FunFam Glutathione-regulated potassium-efflux system protein KefB 532 703 - -
Vian1g03068 790 MobiDBLite consensus disorder prediction 750 769 - -
Vian1g03068 790 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 97 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03068 Vian-Chr1 51104610 51128824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03068 1 776 Inorganic Solute Cotransporters AT4G04850 70.064 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03068 K03455 - gmx:100798214 1325.46