Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03065 ATGGAGAACTATCAGTACCCCTCCTACCCTGACTCCGGCGACTCCTCGCCGCGTTCCAGGGAGATCGACTTCGAGAATCCGCCGCCCTGGGACGACCAGCAGACCCAGAACTTCAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGAACCCATGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATTCTCGCCGTCGACCGCGCCATCAAGTTCCCCGCTTTCCTTTCCAAGCTCGCGGCTCTCTGTGACGCCACGCCGCAGGACCTCACCTTCAAGTACCAACTCCCTGGCGAAGACCTCGACGCCCTAATCTCCGTCACCAACGACGACGACCTGGAACACATGATGCACGAGTACGACCGTCTCTATCGCCCTAACTCCAAACCTGTTAGGATGAGACTCTTTCTCTTCACGCTTTCCTCAAACCCTAATTCCTCGTTCTCTTCGGATCGTGATCGCTTCGTTGATGCTCTTAACTCTGCTCCAATTCCTCCGCAACCTGACCCCATCAAAACACCTCCCGTTACTCCTTCCAATGTCGATTACCTCTTCGGTCTCGACAAGGCCGTTGCTCCTCCCACTCTCCCTCCTTCCTTCGCGGCCGTCAAGTTCCACGATCCCGCGCCCGAGCCAGTCGCGCCGCAGCCGGAGTATCAGGTTCGCGGTGGAATCTCCGTTTCTGATCGCGTCGTTGGATCGGATCCGAGTGCGAACTCGATCGAGATTCAGAGACAGTTGCAGCAGGAGATGCAGCGTTTGCAGATTGCTGAGAATGAATATCGGAGGAGGAGTGAGGATGGTTTCGCCGGTGGCTATGCCGCTGCGGGAGGTGATTATTACATGCAGAAGATACCGGAGAAGGTTCCGCCTGCTAATGCGCCCCATCCCGCCGGGTACTGGCAGGAGAAGCAGTTTTCCGGCGAGGGTTTTCAGACGACAGTCACGACGGCTCCCGGAGGTGCTGATCAGCAGGTCTATGTTATCCCAGCGCCAGGGACTTTCTACCACGCGCCGGTGGTGAGGCCTCCGGCGGCGCAGGGCTACTACGCAGTGCAGAGAATGGGGTCTGAGGGTTTCCGTGAGCAGGCTGTGTTCGGCGGCGTTGCTCAGACGAAGACTGCGTTTTCGTCGGCGGGGCCGGCTCAGCCGGTTAAGGCTTCCGGGTATGCTGAAGGATACGGCGTTGTGAGGCCTGCTGGGGTGCCGGATAATGCTGCGTACACGCAGGTGGCGTATGATAGTGCGAGTGGGAGGCAGGTTTACTATACTGCGCAGGGAGGGGTGGTGCACGCGCCGACGCAGTACCAAGGCGTTCCGGTGGGGTCGGATGTTAGGCCTGTTGGGGTTTCGGTGGGCCAGGATGGTAAGGTTGTTAACAAGGTTAACCAAGGTTCTGTGTGA 1419 0.587 MENYQYPSYPDSGDSSPRSREIDFENPPPWDDQQTQNFKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRAIKFPAFLSKLAALCDATPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNSKPVRMRLFLFTLSSNPNSSFSSDRDRFVDALNSAPIPPQPDPIKTPPVTPSNVDYLFGLDKAVAPPTLPPSFAAVKFHDPAPEPVAPQPEYQVRGGISVSDRVVGSDPSANSIEIQRQLQQEMQRLQIAENEYRRRSEDGFAGGYAAAGGDYYMQKIPEKVPPANAPHPAGYWQEKQFSGEGFQTTVTTAPGGADQQVYVIPAPGTFYHAPVVRPPAAQGYYAVQRMGSEGFREQAVFGGVAQTKTAFSSAGPAQPVKASGYAEGYGVVRPAGVPDNAAYTQVAYDSASGRQVYYTAQGGVVHAPTQYQGVPVGSDVRPVGVSVGQDGKVVNKVNQGSV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03065 472 Coils Coil 245 272 - -
Vian1g03065 472 MobiDBLite consensus disorder prediction 1 31 - -
Vian1g03065 472 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g03065 472 Gene3D - 60 144 - -
Vian1g03065 472 CDD PB1_UP2 43 143 - -
Vian1g03065 472 Pfam PB1 domain 55 143 IPR000270 GO:0005515
Vian1g03065 472 SUPERFAMILY CAD & PB1 domains 55 153 - -
Vian1g03065 472 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 59 145 - -
Vian1g03065 472 SMART PB1_new 54 145 IPR000270 GO:0005515
Vian1g03065 472 PANTHER OS05G0427100 PROTEIN-RELATED 9 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03065 Vian-Chr1 51064555 51065973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03065 39 166 MAP Kinase Kinase Kinase AT5G57610 43.704 6.65e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03065 - - gmx:100810467 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03065 1 51064555 51065973 Vian6g01909 6 36323624 36325006 PCT