Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03060 ATGGGTAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAGTGGGTTGGTGAAGAAAGCTAGAGAACTGTCTATTCTCTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGCCAAGCTTTATGACTATGCCAGTTCAAGCTTGAAATCTGTTATTGATCGCTATAACAAGGTCAAAGAGGACCGTCATCAGTTAATGAACCCTGCTTCAGAAATCAAGAAATATACTATAACAGTTCTTTCCATACCTGTCCCTTGA 300 0.4167 MGRGKIVIRRIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTAKLYDYASSSLKSVIDRYNKVKEDRHQLMNPASEIKKYTITVLSIPVP 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03060 99 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Vian1g03060 99 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Vian1g03060 99 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vian1g03060 99 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vian1g03060 99 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian1g03060 99 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03060 Vian-Chr1 50883543 50885506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03060 1 95 MADS-box Gene Family AT2G14210 78.125 3.91e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g03060 SRF-TF 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03060 K09264 - gmx:100779647 157.147