Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03056 ATGGCTTCGAGTGGATGGAGAACCATTTTCTTTTTGTTCATAATCAACACTGCAAAAGTTCAACCTCACTCTTTCGATTACCCAAACTTCAATTCATCTTATGCAAAGCAACTAAAGTTGGAAGGTAATGCTTCCACCTCAGGTTCTGCTATCCAACTCACAGTAAACGCAACGGATCCAAAGAACAACGGGTCTGGGACAGTAGGAAGAGTGACATATCCAGAGGAGATAAATCTTTGGGACAAGAGTTCAAATGAACTAAAAGACTTCACCACAAACTTTTCCTTTCTTCTTTCCTCCAATCAGAGTTTCTATGGAGATGGTTTAGCATTCTTCCTTGCAAGCCCAAATCTTCCATCCACAGACGATGAAAACCTAAGAGGGGGAGGCCTTGGTATAGGGCTTGTTGTTGGCACAGAAAATCTCATTGAGACTGATTATCAATTTGTGGCAGTGGAGTTTGACACCTACTCAGACAACTGGGACCCAGATGGGGCTCATGTAGGTGTAAATATCAATGCTATGAAGTCTGAAATATTTGAGACATGGTGGCCAAATATCACGCAAGGGGAAGTATGTAACTGTAGTATTGTATACAATTCTAGAAAGAATATTTTGAAGGTTTCTTTCACGGGATCCATGTTAGGTGCTGGGAATGAAACTACTCAGCAACTTTCATACCACGTTAATATCAGAGATCAATTACCAAAGTCAGTTATCGTTGGCATATCAGCTGCGACAGGAAGATATGCTGAGGAACATACCTTGCTCTCATGGTCATTTAGCACAAGTACAAGCCCACCACCAAGTGTGGTTAATTCAACGAAGAAATACAAGTTAATCAGTTCAATAATGTTGGAGGGAGTTGTAATTGGTACATTGTTGTTTTTTATTCTGTTAGGGTTGGTGTATATTTTGTTAAGAAGGATAAACAAAGGAAAAGAAAAGCGCACTTCTCATCTGAAGATGGATGATGACTTCCACGAGAGAACTACAGAGATTAACTATCATGAATTGGCCGCTGCAACCAACAACTTTGAAGAGACACATAAACTAGGCCAAGGTGGCTTGGGCTGTGTTTATAAAGGCTATTTTGAATCCTTGAACTCCTATGTTGCTATAAAGAAGATATCAACAGGTTCACCACAGGTTTTGAAGGAATATGCAGCAGAAGTGACGATCGTTAGCCAATTGAGGCACAGGAATTTGATGAAACTCACCGGTTGGTGCCACAAGAAGAATGATCTCTTCTTAATATACGAGTACATGCCAAATGGCAGCTTGGATTCTTGTCTTTTTGGTGGAGAGAAGTTCTTGTCATGGAAAATGAGGTACAATGTAGCTTTGGGCTTGGCATCAGCATTGCTTTACCTTCAGGAAGAATGGGAGAAATGTGTGCTTCACAGGGACATCAAATCAAGCAACATATTGCTGGACTCCAACTTCAACCCTAAGCTTGGGGACTTTGGCCAGGCAAGGCTGGTGGATCATGATAAAGGGTCAGAAACGACGGATGTTGCTGGGACCATGGGTTACATAGCTCCTGAATGTATGAACACAGGCCAGGCTCGAAAGGAATCTGATATATTCAGTTTTGGGATTGTTGTGTTGGAGATAGCCACTGGAAGAAAAGCCGTTCACCATGAAGACATGGAGGGTGAAGTATCAGTGGTTGAGTGGGTATGGAGGCTCTATGGATTGAGGAATCTCCTTGCAGCAGTAGATCCAAAGCTGCATGGGGAATTTGATGTGCAGCAAATGGAATGCTTAGTCGTTGTTGGTCTTTGGTGTGCTAGTCCAGATTTTGCATCCAGACCAACCATAAGGCAAGTGATGAAGGTGCTTAAGTTTGAAGCTTCTTTGCCAATTCTCTCACAGCAGATCCCATGCAAGCCTCTTTCTGTCCAATAA 1911 0.4218 MASSGWRTIFFLFIINTAKVQPHSFDYPNFNSSYAKQLKLEGNASTSGSAIQLTVNATDPKNNGSGTVGRVTYPEEINLWDKSSNELKDFTTNFSFLLSSNQSFYGDGLAFFLASPNLPSTDDENLRGGGLGIGLVVGTENLIETDYQFVAVEFDTYSDNWDPDGAHVGVNINAMKSEIFETWWPNITQGEVCNCSIVYNSRKNILKVSFTGSMLGAGNETTQQLSYHVNIRDQLPKSVIVGISAATGRYAEEHTLLSWSFSTSTSPPPSVVNSTKKYKLISSIMLEGVVIGTLLFFILLGLVYILLRRINKGKEKRTSHLKMDDDFHERTTEINYHELAAATNNFEETHKLGQGGLGCVYKGYFESLNSYVAIKKISTGSPQVLKEYAAEVTIVSQLRHRNLMKLTGWCHKKNDLFLIYEYMPNGSLDSCLFGGEKFLSWKMRYNVALGLASALLYLQEEWEKCVLHRDIKSSNILLDSNFNPKLGDFGQARLVDHDKGSETTDVAGTMGYIAPECMNTGQARKESDIFSFGIVVLEIATGRKAVHHEDMEGEVSVVEWVWRLYGLRNLLAAVDPKLHGEFDVQQMECLVVVGLWCASPDFASRPTIRQVMKVLKFEASLPILSQQIPCKPLSVQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03056 636 SUPERFAMILY Protein kinase-like (PK-like) 330 617 IPR011009 -
Vian1g03056 636 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vian1g03056 636 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03056 636 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Vian1g03056 636 Gene3D - 21 266 - -
Vian1g03056 636 FunFam Lectin-domain containing receptor kinase A4.3 423 634 - -
Vian1g03056 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vian1g03056 636 Pfam Legume lectin domain 24 270 IPR001220 GO:0030246
Vian1g03056 636 CDD STKc_IRAK 352 616 - -
Vian1g03056 636 CDD lectin_legume_LecRK_Arcelin_ConA 24 264 IPR001220 GO:0030246
Vian1g03056 636 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03056 636 SMART serkin_6 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03056 636 ProSitePatterns Legume lectins beta-chain signature. 150 156 IPR019825 -
Vian1g03056 636 PANTHER - 55 617 - -
Vian1g03056 636 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 269 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03056 Vian-Chr1 50601423 50603333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03056 9 630 Receptor kinase-like Gene Family AT5G10530 42.138 1.06e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g03056 Pkinase 6.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03056 - - vum:124829843 779.245