Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03055 ATGGCTGCTTCTGGATTACTGTTTAGGATCATTTTGTTCATCCTAATCATCGCCATTGCAATAACAAATGCCCACACTCAGTCTTTTGAGTGTCCCAACTTCAGTTCAACTTGTATAAAGCACCTTAAGCTAGAAGGGAGTGCTTCTACCTCAGGTTCCGCTATCCAACTCACAGAAGAGAACGCAATATACCCAAGCAAATCGTTTGGGAGCGCAGGGCGAGTCACGTATGCTGAACGAATAAACCTTAGGGACAAGAGTTCAAATGAACCAAGAGACTTCATTACCAACTTTTCCTTTGTTGTTTCCTCAAATCAGAGTATCTATGGCGATGGTTTGGCATTCTTCCTTGCAAGCCCAAATCTTCCATCCACAGATAAGTTACAGCTAAGAGGAGGAAGTCTTGGGGTTGGCCTAACGGATGGTGATCGTGAGCTCTTCCGGTTAGGTTATCGATTCCTGGCAGTGGAATTTGACACTTTCAGAAACCCATGGGACCCAGTTGGTGCTCATGTAGGCATAAATATCAATGACATGGACTCTAAAATTTTTGAGACATGGTGGATAAATATGACACATAGGAAGGTTTGTAACTGTAGTATTGTATACGATTCTAGGAACAGTATTTTGAATGTCTCTTACACTGGATACAAATTAAGCGATGGGAAAGTGAGAAAGACTACACAACATCTTTCATACTCTGTCGATATAAGGCAGGAATTACCAGACTCCGTTGTTGTTGGCATATCAGCTGCAACTGGAAGATATTCTGAACAGCATGCCTTGCTCTCATGGTCGTTTAGCATCACCCCACCAAGTACGGCCGATAAAGAAAAGGAATGGAAGCCTGTCATGATAACATTGAAGGGAATAGGAATTGGTGCTGTCTTGTTTTTGAGTTTGTTAGGAATGGTTGAGATTTCATTGAGGATGATTGCCAAGAGAAAGGAAGTAGAAGTGACGATTATTAGCCAATTGAGGCACAGGAATTTGGTGAAACTCACTGGTTGGTGCCACAAGAAGAAAGATTTTCTCTTGATATACGAGTACATGGAAAATGGCAGCTTAGACTCTCAACTTTTTCGGGGAGAAAGTATATTACCCTGGGAAGTGAGGTACAACATAGCGCTGGGCTTGGCCTCAGCATTGCTTTACCTACAAGAAGAATGGGAGAAATCAGCAGATGAAAACCTAGTTGGGGAATTTGATGTGAAGCAAATGGAATGTTTACTGGTAGTTGGTCTTTGGTGTGCTAATCCAGATTCAGCATACAGACCTGCAATAAGGCAAGTGATTAACGCAAGCTTATCCAGGCGTTGTGAGACGGAGACTCAAATAGAAGCTATAGCGCTGGCGACAAAGCGTGATGGTGAGAGAAACATTGAAGGAAAGGGTTGTGCTAGTGTCGCCATCGACACCATTGGTGGCCATTATTATAGGCAATAG 1446 0.4281 MAASGLLFRIILFILIIAIAITNAHTQSFECPNFSSTCIKHLKLEGSASTSGSAIQLTEENAIYPSKSFGSAGRVTYAERINLRDKSSNEPRDFITNFSFVVSSNQSIYGDGLAFFLASPNLPSTDKLQLRGGSLGVGLTDGDRELFRLGYRFLAVEFDTFRNPWDPVGAHVGININDMDSKIFETWWINMTHRKVCNCSIVYDSRNSILNVSYTGYKLSDGKVRKTTQHLSYSVDIRQELPDSVVVGISAATGRYSEQHALLSWSFSITPPSTADKEKEWKPVMITLKGIGIGAVLFLSLLGMVEISLRMIAKRKEVEVTIISQLRHRNLVKLTGWCHKKKDFLLIYEYMENGSLDSQLFRGESILPWEVRYNIALGLASALLYLQEEWEKSADENLVGEFDVKQMECLLVVGLWCANPDSAYRPAIRQVINASLSRRCETETQIEAIALATKRDGERNIEGKGCASVAIDTIGGHYYRQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03055 481 Gene3D Transferase(Phosphotransferase) domain 1 310 411 - -
Vian1g03055 481 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Vian1g03055 481 ProSiteProfiles Protein kinase domain profile. 256 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03055 481 SMART tyrkin_6 285 449 IPR020635 GO:0004713|GO:0006468
Vian1g03055 481 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 276 IPR013320 -
Vian1g03055 481 PANTHER - 54 298 - -
Vian1g03055 481 Pfam Legume lectin domain 27 279 IPR001220 GO:0030246
Vian1g03055 481 SUPERFAMILY Protein kinase-like (PK-like) 315 390 IPR011009 -
Vian1g03055 481 CDD lectin_legume_LecRK_Arcelin_ConA 28 270 IPR001220 GO:0030246
Vian1g03055 481 Gene3D - 24 288 - -
Vian1g03055 481 Pfam Protein tyrosine and serine/threonine kinase 319 388 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03055 Vian-Chr1 50593985 50596502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03055 384 432 Receptor kinase-like Gene Family AT5G10530 54.000 1.50e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g03055 Lectin_legB 6.7e-55 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03055 - - vum:124829843 583.948