Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03054 ATGGCAGGTGGTGATTGGCGTTTTGGTCTTTATGCAATCACTCTGGGGTTTTGTTATGCAAGAGGAACCTTTGTGTTCCTCTTGATAATCCCTCTTGAAAAGGCTCATTCACAACCATTTTCTTTTGAATACAAGTTCAGAAACGCTGCGGACGTAGAAAAGCTAAACCTTGAAGGAAATGTTTCTGTTTCAAATTCTGGCATCCACCTTGCAGTGGACTCAAACCATGGAGGAAGTGGGAGTGTTGGGCGAGTAACAAGTCCCCAGCTAATCAAACAAGAAAGCTTCGTTACCCAGTTTTCCTTTATGATCATCCCAAACAAGAGTTCTCGTGGAGACGGTTTTGCTTTCTTTATAGCAAACCCTAACCTCCTAAAAGTGAATGCAACGGATGAAATAAAGCGTGGAGGCCTTGGCATTGGTCTGGTGAATGACACAGCACCTCGCTCAACCAGATTTAATGATTATCGATACGTGGCTGTGGAGTTTGACACTTTCTCAAACGATTGGGACCCTCGGGACCCACATGTTGGTGTGAATGTAAACTCTATGCGCTCTGAGGTAGTGGAGAATTGGAGAACAGATACTACTTCAAGAGGCCCTTATAAGTGTACCATTGAGTACCACTCCCAAGATCATTGTCTGAACATTTCTTTCACTGGAATCATGCCCAATGGAAAGCGAGTAACACAGCACCTTCTTTACCACATTGATTTGGGAAACTACTTAGACGAGAGAGTTGTTGTAGGTATATCAGCTGCAACAGGAGATGGATTTGATCAGTATACCTTGCTGGAATGGTCACTTACTGAAATAACAATTAATGATAAGAAAGAGTTCGACAAGACAATGTTGTGGGAGGGAATAGGATTTGGTTTAGGTGGGGCTGCGAGTTTCTTCGTGTTGCTCCTCCTTGTATTGAGGAAGAGGGGCGAGAAAGAAAAGGAAGAAGCCACTTCAGAAACCTCTTCGGATTTGAAAATGGATGATGCGTTCAAAATGGGCACTGGACCTAAGGAGATCAGATACGAGGTTTTGGTATCTGCGACAAACAACTTTAAAGAGAGACACAAGCTGAGGCAATGTCTTTACAAAGGTTATTTCAAAGACATAAACACTTATGCTGCAATACAGAGAATATCAGCTGGTTCATCACATGGTGTGAAGGAATATGCAGCGGAAGCAAGGATCATTAGCCAATTGAGGCACAGGAATTTGGTGAAACTCATCGGTTGGTGCCACAAGAAGAATCATCTCTTTCTGATATATGACTACATGCCAAATGGCAGCTTGTATTCTCATCTTTTTCATGGGGAGAGTATCTTATCGTGGCATTTGAGGTACAACATAGCTCTAGGCTTGGCCTCAGCATTGTTTTACCTACAAGAAGAGTTTGAAAAATGTGTGTTTCATAGGGACATCAAATCAAGCAACATACTGTTGGACTCTAATTTCAGTGCTAAGCTTGGGAATTTTGGCCTGGCAAGGGTTGAGGGTCGTAAGAAAGGGTCAAAAACAACAGTTACGGCTGGAACAACGGGTTACCTTGACCCAGAATATATTATCACAGGCAAGGCTAGAAAGGAATCTGATATGTTCAGCTTTGGGGTTGTTTTGTTGGAGGTAGCAAGTGGAAGAAAAGCCATTGATCAAGAAGAGAAAGAGGGTCAACCTCAAGTATCACTAGTTGAGTGGGTGTGGGAGCTCTATAGACTTAGAAATCTCCTTGCAGCAGCAGATCCAAACCTGAATGGGGAATTTGATGTGCAGCAAATGGAATGCTTGCTTGTTGTTGGTATTTGGTGTGCTAATTCAGATAGCAAGACAAGGCCCTCTATAAGGCAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTTCCTGTTCTCCATCACCACCTATCTCCCTCCAACAACAACAGATGA 1923 0.429 MAGGDWRFGLYAITLGFCYARGTFVFLLIIPLEKAHSQPFSFEYKFRNAADVEKLNLEGNVSVSNSGIHLAVDSNHGGSGSVGRVTSPQLIKQESFVTQFSFMIIPNKSSRGDGFAFFIANPNLLKVNATDEIKRGGLGIGLVNDTAPRSTRFNDYRYVAVEFDTFSNDWDPRDPHVGVNVNSMRSEVVENWRTDTTSRGPYKCTIEYHSQDHCLNISFTGIMPNGKRVTQHLLYHIDLGNYLDERVVVGISAATGDGFDQYTLLEWSLTEITINDKKEFDKTMLWEGIGFGLGGAASFFVLLLLVLRKRGEKEKEEATSETSSDLKMDDAFKMGTGPKEIRYEVLVSATNNFKERHKLRQCLYKGYFKDINTYAAIQRISAGSSHGVKEYAAEARIISQLRHRNLVKLIGWCHKKNHLFLIYDYMPNGSLYSHLFHGESILSWHLRYNIALGLASALFYLQEEFEKCVFHRDIKSSNILLDSNFSAKLGNFGLARVEGRKKGSKTTVTAGTTGYLDPEYIITGKARKESDMFSFGVVLLEVASGRKAIDQEEKEGQPQVSLVEWVWELYRLRNLLAAADPNLNGEFDVQQMECLLVVGIWCANSDSKTRPSIRQVIKVLNFEAPFPVLHHHLSPSNNNR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03054 640 FunFam Lectin-domain containing receptor kinase A4.3 426 638 - -
Vian1g03054 640 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 270 IPR013320 -
Vian1g03054 640 ProSitePatterns Legume lectins beta-chain signature. 159 165 IPR019825 -
Vian1g03054 640 Pfam Protein kinase domain 364 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03054 640 SMART serkin_6 353 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03054 640 PANTHER - 65 623 - -
Vian1g03054 640 Gene3D - 38 286 - -
Vian1g03054 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vian1g03054 640 SUPERFAMILY Protein kinase-like (PK-like) 338 624 IPR011009 -
Vian1g03054 640 Gene3D Transferase(Phosphotransferase) domain 1 426 633 - -
Vian1g03054 640 CDD lectin_legume_LecRK_Arcelin_ConA 40 270 IPR001220 GO:0030246
Vian1g03054 640 Pfam Legume lectin domain 40 282 IPR001220 GO:0030246
Vian1g03054 640 Gene3D Phosphorylase Kinase; domain 1 338 425 - -
Vian1g03054 640 ProSiteProfiles Protein kinase domain profile. 328 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03054 Vian-Chr1 50580424 50582346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03054 24 629 Receptor kinase-like Gene Family AT5G10530 40.700 3.25e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g03054 Pkinase 2.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03054 - - cam:101492002 603.594