Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03053 ATGGCAGTATCTTGCTACTGTAAGAAAAGTTATGTACGTGCTTGTTTAACATTAACGCTCTTGCTTCTTATAACACCTCATGCAGCTTCATTGGAATTCGACTATCAGAGCTTTGGTGACACCGGAAACTTCTTCAATACTTCGGGAGATGTTAAACCTCAACAAGGAGTGCTCAAACTCACCAAAAATGAAACATTCAGTTATGGTAGAGTCATATATCCCAAACTATTGCATCTTTGGGACATAAACTCAGGGAAAGTCACGGATTTCACTACCCATTTCTCCTTTAGCATCAGCGCCTTAAATAAAAAACATGCAGATGGCATCGCCTTCTTTCTGGCACATCCGGGCTTTCCATCGCTTTCCCCAAGAGATGGAGCTGGTATTGGTCTTGCTAGCCGTGATCAACTCAGCAATCAAAACTACAAAGTGGATCATCCATTTGTGGCAGTGGAATTTGATACCTTCGTTAATGAGTGGGATCCTCAGTCGTATCCCCATGTGGGTATCGATATCAATTCAATCGTATCTTCTGCAACTGCAGAGTGGTTCACCAGCCAGTCTGAGAGTGGATACGAGGCTGATATTAGTTTCGATTCCAGTTCAAACAAATTAAGTGTCACCTTTACTGGGTATAAGGCGGACGTCGTAGTTCAAGGGAACTTATCCTCTGTGGTCAATCTGAAAGATGTCTTACCTGATTGGGTTGAATTTGGCTTTTCTGCAGCAACAGGAGATTATTACGACGAATATGCTCTTAGCTCATGGTCCTTCAACTCTAGTTTTCACATGGAAGCACATAAGGGTGGAAGCAAAAGAGGGCTGGTGATAGGGCTGAGCCTTGGACTTGGTGCAGGTATTTTAATTGTTATTTTGGGGGTAACTTTTCTTGTGAGATGGATGCTGAGGACTACAGGTATGGAAGACGCCTCACTTTTTGACCATGCCATGGACAATGATTTCGAAAAAGTCTCTCTACCCAAGAAGTTTTCCTTTGAAGAACTGGCCAGAGCAACTAATAACTTCGCTAGAGAAAACAAAATAGGACAGGGAGGTTTTGGGGCCGTCTACAGGGGATTTATTAAAGAGTTGAACACCGATGTTGCCATCAAGAAGGTATCTCGTGAATCTACACAAGGGGTCAAAGAGTACATATCTGAAGTAAAGATCTTTGGTCAACTGAGACATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATCAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTAACATGGAAAGTGAGATATAATATTGCGAGAGGTTTGGCTTCAGCATTGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCCAATTTTAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGATATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTATCACAAGAGGCAAGGCTAAGGCCTACTATGAGGCAAGCAGTTCAAGTGCTTAG 1593 0.4225 MAVSCYCKKSYVRACLTLTLLLLITPHAASLEFDYQSFGDTGNFFNTSGDVKPQQGVLKLTKNETFSYGRVIYPKLLHLWDINSGKVTDFTTHFSFSISALNKKHADGIAFFLAHPGFPSLSPRDGAGIGLASRDQLSNQNYKVDHPFVAVEFDTFVNEWDPQSYPHVGIDINSIVSSATAEWFTSQSESGYEADISFDSSSNKLSVTFTGYKADVVVQGNLSSVVNLKDVLPDWVEFGFSAATGDYYDEYALSSWSFNSSFHMEAHKGGSKRGLVIGLSLGLGAGILIVILGVTFLVRWMLRTTGMEDASLFDHAMDNDFEKVSLPKKFSFEELARATNNFARENKIGQGGFGAVYRGFIKELNTDVAIKKVSRESTQGVKEYISEVKIFGQLRHKNLVQLFGWCHQHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNAKLGDFGLARLMDHDIGSKTTVLAGTIGYLPPEAITRGKAKAYYEASSSSA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03053 530 FunFam L-type lectin-domain containing receptor kinase IX.1 327 418 - -
Vian1g03053 530 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246
Vian1g03053 530 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Vian1g03053 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vian1g03053 530 Gene3D Transferase(Phosphotransferase) domain 1 419 527 - -
Vian1g03053 530 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
Vian1g03053 530 Pfam Protein kinase domain 343 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03053 530 Gene3D - 29 273 - -
Vian1g03053 530 Pfam Legume lectin domain 30 265 IPR001220 GO:0030246
Vian1g03053 530 ProSiteProfiles Protein kinase domain profile. 342 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03053 530 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524
Vian1g03053 530 PANTHER - 50 520 - -
Vian1g03053 530 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Vian1g03053 530 SMART serkin_6 342 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03053 530 SUPERFAMILY Protein kinase-like (PK-like) 322 519 IPR011009 -
Vian1g03053 530 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vian1g03053 530 FunFam Lectin-domain containing receptor kinase A4.3 419 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03053 Vian-Chr1 50541199 50543030 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03053 21 519 Receptor kinase-like Gene Family AT5G10530 44.227 1.66e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g03053 Lectin_legB 3.4e-59 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03053 - - var:108318726 1017.68