Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03047 ATGTCTTCTCTTTGGTTTCTTAAACTCATTGTCAGATGCCTTGATCATTGTGCATGGCCTCTTCTTGCTCTGGGGTACCCTTTATGTGCTTCTGTACAAGCAATTGAGACCGAATCCTATAAAGCAACTAAGGATTTGATATCGTATTGGATACTCCTCTCGCTAATATACCTATTTGAGTATGCATTTTTTAGGCTTCTTCAATGGTACCAGTTCTGGCCTTACACTAAGCTAATGATCATCTTCTGGCTCATTGTGCCAGACTTTGGACGGGCTTCTTATGCCTACAATAATATTATTCGAACATGCATCTCAAATCCACAAGCAAGCATACGTAGTTTAAATAACTGGAGGAAGAATTTTGTCAAGAAAGATAAAGATAACTTTTTACTGCATGCAGATAGATATTTAGAAGAGAATGGAACAGAAGCCTTAATGAAACTCATTGCTAGCAAGAACACGACTAACAAACCTGATGCACAAGCAACAATTGCAAGTAGAGTTACTGACCATGAAGAGATGCAACAGACAAATGTGAAAAATCTTCAAACAGAGCCCAAAGCCACCAAAGATTCGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAATCAAAATATTCCTGTGGTGCCTAAACTTGTGCAAAGTGAGAATGCTTCAGCAACCATGTTGGAAACTAATGGAATAGTGGTGAAAGAGAAGGGTGTTGAAGAGCTTCCTCAGATTTTTACACATAAGGAAGTTCAGAAGGAGTGGACTTGCGCTTTATGCCATGTAACAACAACGAGCGAGAAAACCTTGAATTCACACCTGCAAGGTAGCAAACATAGGCAGATGGAGATTGCTATGAAGGCAAAGAATCAATCTGTTTCACAGAAGCTGAAAAGTGATCACTCCAAAGAGGAATTAAAACAGAAGAACATTTATCAGCCAAAATTCAAGACCAAGAATAGAGAGAAACCTACTTGGACGAATAATTCAGAAATAAGATGTGAAATCTGTAATGTGAAATGCCCTTGCGAGATTACCTTGGCCTCTCATAGAAAAGGGAAGAAGCATTTGGCTAAGTTAAAAGTTTAA 1080 0.387 MSSLWFLKLIVRCLDHCAWPLLALGYPLCASVQAIETESYKATKDLISYWILLSLIYLFEYAFFRLLQWYQFWPYTKLMIIFWLIVPDFGRASYAYNNIIRTCISNPQASIRSLNNWRKNFVKKDKDNFLLHADRYLEENGTEALMKLIASKNTTNKPDAQATIASRVTDHEEMQQTNVKNLQTEPKATKDSEVIEKKEIPTGNQNIPVVPKLVQSENASATMLETNGIVVKEKGVEELPQIFTHKEVQKEWTCALCHVTTTSEKTLNSHLQGSKHRQMEIAMKAKNQSVSQKLKSDHSKEELKQKNIYQPKFKTKNREKPTWTNNSEIRCEICNVKCPCEITLASHRKGKKHLAKLKV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03047 359 Gene3D Classic Zinc Finger 231 281 - -
Vian1g03047 359 Gene3D Classic Zinc Finger 291 359 - -
Vian1g03047 359 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Vian1g03047 359 PANTHER HVA22-LIKE PROTEINS 10 169 IPR004345 -
Vian1g03047 359 SUPERFAMILY beta-beta-alpha zinc fingers 325 358 IPR036236 -
Vian1g03047 359 SMART c2h2final6 329 353 IPR013087 -
Vian1g03047 359 SMART c2h2final6 252 276 IPR013087 -
Vian1g03047 359 Pfam Zinc-finger of C2H2 type 330 353 - -
Vian1g03047 359 Pfam Zinc-finger of C2H2 type 252 276 - -
Vian1g03047 359 SMART ZnF_U1_5 249 283 IPR003604 GO:0003676|GO:0008270
Vian1g03047 359 SMART ZnF_U1_5 326 359 IPR003604 GO:0003676|GO:0008270
Vian1g03047 359 MobiDBLite consensus disorder prediction 171 190 - -
Vian1g03047 359 MobiDBLite consensus disorder prediction 171 185 - -
Vian1g03047 359 SUPERFAMILY beta-beta-alpha zinc fingers 246 287 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03047 Vian-Chr1 50437849 50440585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03047 252 353 C2H2 Transcription Factor Family AT2G19380 33.628 1.07e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03047 - - pvu:PHAVU_002G214600g 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03047 1 50437849 50440585 Vian1g03047 1 50437849 50440585 ECH