Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03041 ATGGATACGGTGAATAATCGCAGCCAAAACAGGGAAGAGCAGCCTCCGCCGCCAGGGACTGCGCTTGCTATGGTGGATGCTTTCCATTACTCCAATGGTTCCGATGGTGGAGAAGAAGCAACCACTCCATTGGGCCATGCTTCAACTGCTGTGCACGCCCGAACCAGTGAACTCACCATTTCCTTTGAGGGCGAAGTTTATGTTTTTCCTGCTGTTACCCCACAAAAGGTGCAGGCTGTATTGTTACTTCTGGGAGGGCAGGAGACACCAAATACTGTCCCCACCCCGGACTTTTTGTTGCAGCAAAACAGTCAGGACATTAGGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTAGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATACGATACACATGTCGTAAAGAGGTTGCCCAGAGTAACATCCCCCTCATGCCTGTACCCCTGTTTCTTATGGAAGCATTTATGGTGTTTGAAGTCTGCATTGGTGATTGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCTGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCCAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGACCTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCTGAGGAAACAAAGCCTATGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTCTTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCAGGGACCGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGA 1128 0.4583 MDTVNNRSQNREEQPPPPGTALAMVDAFHYSNGSDGGEEATTPLGHASTAVHARTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQETPNTVPTPDFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQSNIPLMPVPLFLMEAFMVFEVCIGDWMHRKNGQFASLKEDYKSHAENWDSSNAIPGPESTCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNDLDTSADIKPSKAEAEHSCAKQDKEGSPEETKPMQMDSRRSPEKTNEQFLIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03041 375 CDD ZnF_GATA 212 255 IPR000679 GO:0006355|GO:0043565
Vian1g03041 375 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g03041 375 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g03041 375 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Vian1g03041 375 SMART tify_2 51 86 IPR010399 -
Vian1g03041 375 Pfam GATA zinc finger 213 249 IPR000679 GO:0006355|GO:0043565
Vian1g03041 375 Gene3D - 208 264 IPR013088 GO:0006355|GO:0008270
Vian1g03041 375 ProSitePatterns GATA-type zinc finger domain. 213 240 IPR000679 GO:0006355|GO:0043565
Vian1g03041 375 Pfam tify domain 54 85 IPR010399 -
Vian1g03041 375 SMART GATA_3 207 260 IPR000679 GO:0006355|GO:0043565
Vian1g03041 375 MobiDBLite consensus disorder prediction 270 310 - -
Vian1g03041 375 Pfam CCT motif 122 153 IPR010402 GO:0005515
Vian1g03041 375 PANTHER GATA TRANSCRIPTION FACTOR 28 36 354 IPR045280 GO:0006355
Vian1g03041 375 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 260 - -
Vian1g03041 375 ProSiteProfiles CCT domain profile. 122 164 IPR010402 GO:0005515
Vian1g03041 375 MobiDBLite consensus disorder prediction 270 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03041 Vian-Chr1 50306570 50312063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03041 57 256 Tify Gene Family AT1G51600 50.000 4.68e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian1g03041 GATA 4e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03041 - - gmx:102669848 558.14