Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03027 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCGCGATCGTCATTCAGCAATGCATAGACTGGATCGTCCTTCTATGGAACTGCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAATCATGAATTGAGGCAGTTGAATGGAGAGGATCTGCAAGGATTGACACTGCAAGAACTGCAGAAAATTGAGGAAAATCTTAAAAGGGGTTTGACCAATGTTTCAAAAGTAAAGGTTTGTGCCCTATGA 435 0.4161 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERRDRHSAMHRLDRPSMELQIESDSNDILRKKVEDKNHELRQLNGEDLQGLTLQELQKIEENLKRGLTNVSKVKVCAL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03027 144 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Vian1g03027 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 FunFam Transcription factor, MADS-box 13 82 - -
Vian1g03027 144 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Vian1g03027 144 Coils Coil 92 112 - -
Vian1g03027 144 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Vian1g03027 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 Pfam K-box region 93 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g03027 144 ProSiteProfiles K-box domain profile. 85 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g03027 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g03027 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03027 Vian-Chr1 50041248 50047276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03027 1 140 MADS-box Gene Family AT2G22540 56.338 1.51e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian1g03027 K-box 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03027 - - gmx:100815814 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03027 1 50041248 50047276 Vian6g01935 6 36573994 36582718 PCT