Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03026 ATGGACGGCAGCGGTGGAGGAAACCGAGCGGAGGCGGAGCGGTGGCTGTACACTGCGAACAAGCTGTTGACCGCGAGGGACCTGCACGGGGCGCGCTCCTTCGCGATCCGCGCGCGCGAGTCCGACCCGACTTATGAGGCCTCCGAGCACCTCCTGACGGTGATCGACACGCTCCTGGCGGGAGAGTCGCGAATCAACGACCACCACTGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACCAACATGGACCACATCTCCTCCCAGTATCGCCGCCTCGCTCATCTCCTCGATCCCAGCCGCAACCTCTTCGCCTTCGCCAGCCACGCCTTGTCCCTCGTCAACGACGCCTGGTCCGTACTCTCTAATCCTGCCAAGAAAGCCATGTACGACACCGATCTCCGGCTGCTCACAACTCCGCCGCCGCAGGCCCCGTCGCGTCCTCTTCCTCCTGCACAGCCCCAACCCACGCCCAGGCGAAACCCTAGATCGAGGGATGATTCGGCTGAGACGACTCGGCCGAACTCCAACCGTACCGAGTCCGCTGAGTCGACTCGGCAGACCGGAACCGTCGAAACCGACGGTGGAACGAGTTTCTGGACCTCGTGCCCTTACTGTTACGTTTTGTATGAATACCCAAAGGGGTACGAGGAGTGTACCTTGAGGTGTCAGAGTTGCCGAAGAGGGTTTCATGCGGTGGTGATACGGTCGCCACCGCCGTTGAATGGGAAAGACGGTTCCTATTGCAGTTGGGGTTTTTTCCCGTTGGGATTTTCTGGGGATTCGAAGGACGTGAACGGGTTATCCTCCAATTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTTTGAAGGGGTCGTCCTATAGTAAGCCTAAGAGGAACTGGGATTACTATGATGAAGAGGCTGCCGCCGCGTTTATCGAGTTATCCGATCCCAGTGACGACGATTCCGGTGATGGAGACTGGAGGGTTGTGAAGAGGAGTGGGAGGAAGAAGACTAGAGTTAATAAAGATTCTGGTGATAGAAGGAGGGAAACTGTGGGGAGAGCTAGGAGGGGTGTCCATACAGGGCATGAGAACGTGGGTTCAGGTGATCCTGTTACAGCTGCTGGTGCTACTGCTACTGCTAGTGTCAAAGCTAATTCTAGTGCCAAATCTAATGCTAATGCCAAAGTCAATGCTAATACCAAATTCAATGCTAATGCCAAAGTCAATGCTAATACCAAATTCAATGCTAATGCCAAAGTTAATGCTGCCTCTCCTATGCCTTCTGGTGCAAGGGTGGAGTCTAGTAAGAAGACTGCGTTGGGTGGTTCGAGAAGGAGGGGTGCTGGAAACTTGGGAAAGTTGGATTTGAATGTGGAGTTCAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGTGCGCGATCGTGAAGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGCCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGCAGATGATAAGGTTAAGGGTCATTAG 1545 0.545 MDGSGGGNRAEAERWLYTANKLLTARDLHGARSFAIRARESDPTYEASEHLLTVIDTLLAGESRINDHHCDWYGILQILRYTTNMDHISSQYRRLAHLLDPSRNLFAFASHALSLVNDAWSVLSNPAKKAMYDTDLRLLTTPPPQAPSRPLPPAQPQPTPRRNPRSRDDSAETTRPNSNRTESAESTRQTGTVETDGGTSFWTSCPYCYVLYEYPKGYEECTLRCQSCRRGFHAVVIRSPPPLNGKDGSYCSWGFFPLGFSGDSKDVNGLSSNWNPFSPLFPCPLKGSSYSKPKRNWDYYDEEAAAAFIELSDPSDDDSGDGDWRVVKRSGRKKTRVNKDSGDRRRETVGRARRGVHTGHENVGSGDPVTAAGATATASVKANSSAKSNANAKVNANTKFNANAKVNANTKFNANAKVNAASPMPSGARVESSKKTALGGSRRRGAGNLGKLDLNVEFSNEVEEPSRGVRDREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03026 514 SUPERFAMILY Chaperone J-domain 68 136 IPR036869 -
Vian1g03026 514 MobiDBLite consensus disorder prediction 143 160 - -
Vian1g03026 514 MobiDBLite consensus disorder prediction 336 360 - -
Vian1g03026 514 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 350 - -
Vian1g03026 514 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Vian1g03026 514 MobiDBLite consensus disorder prediction 419 451 - -
Vian1g03026 514 MobiDBLite consensus disorder prediction 176 195 - -
Vian1g03026 514 MobiDBLite consensus disorder prediction 138 195 - -
Vian1g03026 514 MobiDBLite consensus disorder prediction 462 479 - -
Vian1g03026 514 Pfam DnaJ domain 71 133 IPR001623 -
Vian1g03026 514 MobiDBLite consensus disorder prediction 311 370 - -
Vian1g03026 514 Gene3D DnaJ domain 60 141 IPR036869 -
Vian1g03026 514 CDD DnaJ 71 125 IPR001623 -
Vian1g03026 514 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03026 Vian-Chr1 49950462 49952006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03026 11 513 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 40.194 1.15e-103 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03026 - - var:108324594 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03026 1 49950462 49952006 Vian6g01936 6 36590327 36591865 PCT