Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03019 ATGGAGCTGCATCACAGAAAGTTACTTGAGCCTCCATCTCCTCCTGTTTACAATGATAAACCAAATCCCAACAGCCACAAAACCACATTCTTGATCGTCGGTTTTTCTGTTGTAGCCGCCGTTTTCGTTGTCCTCTGCTCCTACGCCATCTATGTCAAGTTTTTCTCTCCTAGGAACAGGTCTGTGAGGAGAAGCTTGTCTCGGCCTCAAACTGAGGAAGATTTCTTGGACGAAGAAGCACATGGCCCTATGGTTGACCACCCCATCTGGTACATCCGCACCACTGGCCTCCAACAATCAGTGATCGGTTCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGTCGGAATGTTCCGTTTGTTTGAGCGAGTTTGAAGAGGACGAAAGTCTCAGGCTTTTGCCTAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGTGCTCCTATTGTCACTGACCCCACAAGGGTTCCTTCCATGGACCCCAATGCTTTTGGTTCCACGTCTTTTGAGGAAGTGGAGAGTGGTGGTGGAGAAGAACATAATCATGTTCAAGCTCAAGCTCAAGCTCAAGCCCAACATGGTGATGATTTGTTGAGGGGTGAGGAAGAGGGAGAAGTTGAAGTGTGTGAAACTGAGAACACGGCTTCAGAAGTGGTCGCTGTGCAACCAAGAAGATCAGTGTCTCTTGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGAGATTCTCATGGAAATAATTCAAAGAGAGTTAAAGGTGGTTGCAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATCAAAAGGTCACGATCCTTCAATGCCAAGCACTTAATATCATGGTATGGGCGCAGCCAGAGAAAGCCAAACGCTCCATTGAGAAGCTTCTAA 963 0.4673 MELHHRKLLEPPSPPVYNDKPNPNSHKTTFLIVGFSVVAAVFVVLCSYAIYVKFFSPRNRSVRRSLSRPQTEEDFLDEEAHGPMVDHPIWYIRTTGLQQSVIGSITVCKYKKDEGLIEGSECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFGSTSFEEVESGGGEEHNHVQAQAQAQAQHGDDLLRGEEEGEVEVCETENTASEVVAVQPRRSVSLDSSSAAKISLALATVVSGDSHGNNSKRVKGGCSSSSSSSSSSSIKRSRSFNAKHLISWYGRSQRKPNAPLRSF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03019 320 SMART ring_2 122 163 IPR001841 -
Vian1g03019 320 MobiDBLite consensus disorder prediction 264 295 - -
Vian1g03019 320 MobiDBLite consensus disorder prediction 174 211 - -
Vian1g03019 320 FunFam RING-H2 finger protein ATL54 97 170 - -
Vian1g03019 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 171 IPR013083 -
Vian1g03019 320 CDD RING-H2_EL5-like 121 164 - -
Vian1g03019 320 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vian1g03019 320 SUPERFAMILY RING/U-box 113 171 - -
Vian1g03019 320 Pfam Ring finger domain 121 164 IPR001841 -
Vian1g03019 320 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 179 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03019 Vian-Chr1 49684124 49685086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03019 21 214 C3H Transcription Factor Family AT1G72220 44.660 7.50e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03019 - - vra:106767242 506.908