Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03007 ATGAATGAAAATACCACAATACCACATTCATTTCCTCTGCATGGAACCATCGAGTCACGTTGCTTAATCACTCTTACGTTTGTTCGTCCACAACATAACCCACAAGTTTTAACCACAGCTGAAGGTGATGACACCAAGTCGATAGAAATGAGTGTAAGAGTTCAGGGAGCGAAGGAGGACATAACAGTGACATGGGAGAATTTGTGGGTCACTGTTTCAAGTGGAAACAAAAAGAAGCCAATTCTGCAGGATCTTACAGGTTATGCTAGCCCAGGGAGGATTCTGGCCATAATGGGTCCTTCAGGATGTGGAAAATCTACCCTTCTTGATAGTTTAGCAGGAAGATTGAGCTCACCAATGAAGCATTCAGGGAAGATTCTAATAAATGGCCAGAAACAAACACTGGCCTATGGGACATCAGGCTATGTAACACAAGAAGATGCTATGCTGTCAACTTTAACAGCTGGGGAAACTTTATACTACTCTGCTCAGCTTCAGTTTCCAGATTCCATGTCCACAGCAGAGAAGAAGGAACAGGCAGATATCACACTCAGAGAAATGGGTCTGCAAGGTGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGTCTGAGTGGGGGACAAAAGAGGAGACTTAGCATCTGCATTGAGATTCTAACACGGCCAAGACTCCTTTTCCTTGACGAACCGACAAGTGGACTTGATAGTGCAGCTTCCTATTATGTTATGAGTAGAATTGCAACTCTAAATCTAAGAGATGGAATTCGAAGGACTATTGTTACTTCCATCCATCAGCCAAGCAGTGAAGTCTTCGAACTTTTTCATGATCTCTGTCTTCTGTCTTCAGGCGAAACTGTATATTTTGGTCCAGCCTCTGGTGCAAATCAGTTTTTTTCTTCAAACGGTTTCCCATGCCCAACTCTCCACAATCCTTCTGATCACTACTTAAGGATCATAAATAAAGATTTCGAACAGGATGTTGAAGAAGGCTTTGGTAAGGGAGTTAGTACAGAAAAAGCAATCGATACCCTTGTAAAGTCTTACAGGATGTCTCAAGTAAGAAAACAAGTTAAAAGCGAGGTGAAAAAAATAGTTGAAAGTGATTCTTGTGAAACAAGGAAGAACAGGATTCATGCTGCATTTCCTACTCAATGCCTTGTTCTTACAAGAAGATCTTCATTGCAATTCTTTCGTGACATAAGCAATTACTGGCTACGTCTAATTGTCTTTATTGTAATAGCTATAAGCATTGGATCTATCTTCTATAACATAGGCACAGACAATGGATCTATACAGGGGAGAGGTTCTCTGCTCATATTTTTTGTTTCAGTTCTGACTTTCATGACCCTTGTCGGTGGATTTTCTCCACTGTTGGAGGAAATGAAGGTATTTGGACGAGAGAGATTGAATGGACACTATGGTGTGACAGCATTTCTGATAGGCCACACATTCTCTGCTGTTCCTTACATGGTACTGATCTCTGTTATTCCTGGAGGAATAGTGTACCACCTTTGTGGATTGCACAAGGGAATAGATTGTTTCTTCTACTTCACTTGTTTGCTATTTTCCATAGTGATGTGGGTTGAGAGTCTCATGTTGGTGATCGGTAGCATCTGCCCGAACTATGTAATAGGCATGTTCCTTGCTGGTGGAGTTGAAGGACTCATGATTCTAACAGGTGGATTCTACAGACTGCCAAATGATCTTCCGAAGCCATTGTGGAAGTACCCTTTCTACTATGTTTCATTCCTCAAATATGCGCTCCAAGGGTCCTTCAAGAATGACTTTGATGGCCTAACATTTTCAGTGAACCTAGAAGGAGGAGGAACTGCAAACATTAGTGGTAGAGAAGTTCTATCAGAAACATGGCACGTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCAATCATGTTTGGAATGATTGTTCTGTATCGAGTTCTGTTCTTGCTCATCACTAAGTTCAAGGAGAAGTTCAAGCCTTTTCTTGCCTCCATTACTCTTCGACCATGA 2016 0.4182 MNENTTIPHSFPLHGTIESRCLITLTFVRPQHNPQVLTTAEGDDTKSIEMSVRVQGAKEDITVTWENLWVTVSSGNKKKPILQDLTGYASPGRILAIMGPSGCGKSTLLDSLAGRLSSPMKHSGKILINGQKQTLAYGTSGYVTQEDAMLSTLTAGETLYYSAQLQFPDSMSTAEKKEQADITLREMGLQGAINTRVGGWGSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIATLNLRDGIRRTIVTSIHQPSSEVFELFHDLCLLSSGETVYFGPASGANQFFSSNGFPCPTLHNPSDHYLRIINKDFEQDVEEGFGKGVSTEKAIDTLVKSYRMSQVRKQVKSEVKKIVESDSCETRKNRIHAAFPTQCLVLTRRSSLQFFRDISNYWLRLIVFIVIAISIGSIFYNIGTDNGSIQGRGSLLIFFVSVLTFMTLVGGFSPLLEEMKVFGRERLNGHYGVTAFLIGHTFSAVPYMVLISVIPGGIVYHLCGLHKGIDCFFYFTCLLFSIVMWVESLMLVIGSICPNYVIGMFLAGGVEGLMILTGGFYRLPNDLPKPLWKYPFYYVSFLKYALQGSFKNDFDGLTFSVNLEGGGTANISGREVLSETWHVEMGHSKWVDLAIMFGMIVLYRVLFLLITKFKEKFKPFLASITLRP 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03007 671 Pfam ABC-2 type transporter 384 595 IPR013525 GO:0016020|GO:0140359
Vian1g03007 671 CDD ABCG_EPDR 61 290 - -
Vian1g03007 671 Pfam ABC transporter 82 233 IPR003439 GO:0005524
Vian1g03007 671 ProSitePatterns ABC transporters family signature. 205 219 IPR017871 GO:0005524|GO:0016887
Vian1g03007 671 Gene3D - 61 390 IPR027417 -
Vian1g03007 671 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 55 667 - -
Vian1g03007 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 298 IPR027417 -
Vian1g03007 671 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 63 308 IPR003439 GO:0005524
Vian1g03007 671 SMART AAA_5 91 284 IPR003593 GO:0016887
Vian1g03007 671 Pfam ABC-2 type transporter 265 322 IPR043926 GO:0140359
Vian1g03007 671 FunFam ABC transporter G family member 11 61 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03007 Vian-Chr1 49523720 49526776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03007 81 243 Calmodulin-binding Proteins AT2G36910 35.088 3.71e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03007 K05681 - gmx:100790102 1093.18