Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03006 ATGGAGGAAGAGAACGACATAACAGTGACATGGGAGGATTTGCAGGCTAGAGTTGCCGGTGGAAAGAATAGAAAATTAATACTGAATGGTCTAACTGGTTATGCACAACCAGGGAAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCAACACTTCTTGATGCTTTAGCAGGAAGATTGGGATCGAACATAAAGCAAACGGGGAAGATTCTAATCAATGGCCTGAAGCAAGAACTGGCCTACGGAACATCAGGGTATGTGACACAAGACGATGCGATGCTGTCATGTTTAACAGCTGGGGAAACGTTGTACTACTCAGCTGAGCTCCAATTTCCAAACAGCATGTCTGTAGCTGAGAAGAAGGAACGAGCAGATGCTACACTGAGAGAAATGGGTCTGCAAGATGCGATCAACACAAGGGTTGGAGGATGGAGTTGTAAAGGTCTGAGTGGGGGACAGAAACGGAGACTCAGCATATGCATTGAGATTCTAACACATCCCAGACTCCTCTTCCTTGATGAACCAACCAGTGGCCTTGATAGTGCAGCTTCCTTTTATGTTATGACTGGAATTGCAAGTCTCATTCTAAAGGATGGAATTCAAAGGACTATTGTGGCTTCCATCCACCAGCCTAGCAGTCAGGTTTTCCAACTTTTTCATCATCTTTGTCTTCTCTCTTCAGGAGAGACCGTGTATTTTGGACCAGCCTCTCATGCAAATCAGTTTTTCTCTTCCAATGGTTTTCCCTGCCCACCTCTCTACAATCCTTCTGATCATTACCTAAGGATCATAAACAAAGATTTCAATCAGGATGCCGACGAAGGAATTACCACTGAAGAAGCAACTAATATCCTTGATTCTGGTGCCGTTGGAAGGAAGAAGATTCACGCTGAATTCCTCACTCAGTGTCTGGTTCTTCTGAAAAGATCTTCGAAGCAAATCTATCGTGATATAAGCAATTACTGGTTACGTCTGACTGTCTTTATAGCAGTATCTGTAAGCTTGGGCTCTATCTTCTACCACGTCGGTGCAAGTATGAGATCAATTCAGGAAAGAGGATCGCTGCTTTGTTTTTACGTTTCGGTTTTGTGTTTCATGACACTTGTCGGTGGATTCTCGCCGTTAATCGAGGAAATGAAGGTGTTAAAGAGAGAAAGATTGAATGGACATTATGGTATAACAGCGTTTCTGGTAGGGAGCACATTTTCTGCTGTTCCTTACACAGTATTGGTATCTTTCATTCCGGGAGCTATTGTTAATTATCTTTCTGGACTGCACAAAGGATTAGAGAACTTTGTATACTTTTCTTCTGTCCTATTTGCTATTGTGATGTGGGTTGAGAGCCTCATGATGGTTGTTGGGAGCATTTTTCCAAATTTTGTTATGGGTGTAATCACTGCTGGTGGGGTTGAAGGACTGATGATTTTGACAAGTGGATTCTACAGGCTGCCTAATGATCTTCCGAAAGCATTATGGAAATACCCTTTGTACCATGTTTCCTTCCTCAACTATGGTTTCCAAGGATTGTTAAAGAATGAATTTGAGGGATTAATGTTTAGTTCAGATGAGGAAGGAGGAGGCATAAGTCTCAGTGGTAGATATATTCTGTCAGAGACATGGCATGTGCAAATGGGTCACTCAAAGTGGGTTGATCTTGCTATCATGTTTGGTATGATTCTTCTCTATAGAGTTCTATTCTTGCTCATCACTAAATGCAAGGAGAAATTGAAACATGTTCATGTTGGCACTAAGGCTCCTCAAGCAAAAGTTTTCTCCAGAACCAACATCAATGATCTTTAA 1806 0.4208 MEEENDITVTWEDLQARVAGGKNRKLILNGLTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLGSNIKQTGKILINGLKQELAYGTSGYVTQDDAMLSCLTAGETLYYSAELQFPNSMSVAEKKERADATLREMGLQDAINTRVGGWSCKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASFYVMTGIASLILKDGIQRTIVASIHQPSSQVFQLFHHLCLLSSGETVYFGPASHANQFFSSNGFPCPPLYNPSDHYLRIINKDFNQDADEGITTEEATNILDSGAVGRKKIHAEFLTQCLVLLKRSSKQIYRDISNYWLRLTVFIAVSVSLGSIFYHVGASMRSIQERGSLLCFYVSVLCFMTLVGGFSPLIEEMKVLKRERLNGHYGITAFLVGSTFSAVPYTVLVSFIPGAIVNYLSGLHKGLENFVYFSSVLFAIVMWVESLMMVVGSIFPNFVMGVITAGGVEGLMILTSGFYRLPNDLPKALWKYPLYHVSFLNYGFQGLLKNEFEGLMFSSDEEGGGISLSGRYILSETWHVQMGHSKWVDLAIMFGMILLYRVLFLLITKCKEKLKHVHVGTKAPQAKVFSRTNINDL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03006 601 SMART AAA_5 37 226 IPR003593 GO:0016887
Vian1g03006 601 ProSitePatterns ABC transporters family signature. 151 165 IPR017871 GO:0005524|GO:0016887
Vian1g03006 601 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 254 IPR003439 GO:0005524
Vian1g03006 601 Pfam ABC-2 type transporter 211 280 IPR043926 GO:0140359
Vian1g03006 601 Pfam ABC transporter 29 179 IPR003439 GO:0005524
Vian1g03006 601 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 4 584 - -
Vian1g03006 601 FunFam ABC transporter G family member 11 7 290 - -
Vian1g03006 601 Pfam ABC-2 type transporter 303 516 IPR013525 GO:0016020|GO:0140359
Vian1g03006 601 Gene3D - 1 248 IPR027417 -
Vian1g03006 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 245 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03006 Vian-Chr1 49510646 49513509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03006 27 240 Calmodulin-binding Proteins AT2G36910 25.339 3.40e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03006 K05681 - gmx:100820615 944.495