Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03004 ATGGATAGTTCAGAAGCAGTTTTGGAGAAAAGTGTGATGAACATTGAAGGCAGCAGAGTGGAAATGGAAGGTATCTGCTTGACATGGAAGGATGTATGGGTCACTGCTTCTAACAGAAACAATGGAAGCAGATCAATTCTCGAGGGTCTCACTGGTTATGCTAAACCAGGGCAACTCTTGGCAATTATGGGTCCTTCTGGCTGTGGCAAATCTACACTACTTGATACTTTAGCAGGTAGATTAAGTTCAAAGATGAGGCAAAGTGGGGAGATTCTGATCAATGGTCATAAACAAAGATTGACTTATGGAACCTCAGCGTATGTGACACAAGATGATACCTTGTTGACAACCTTAACGGTTGGAGAAGCTGTGCATTATTCAGCTCAACTGCAGTTACCTGACACCATGTCAAAACAAGAGAAGAAAGAGAGAGCAGATTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATGGGGTGTTAAAGGGATTAGTGGTGGTCAGAAAAGGAGAGTTAGCATCTGCATTGAGATTCTTACACGACCTAAACTTCTCTTTCTTGATGAACCAACAAGTGGACTTGACAGTGCAGCTTCCTACTATGTCATCAAAAGAATCGCTTCCCTTGCTCAAAATGATCACATTAAGAGGACTGTTATAGCATCAATCCATCAACCTAGTACTGAAGTTTTTCAACTCTTCAATAACCTTTGTCTTTTGTCTTCTGGTAAAACAGTTTACTTTGGACCTGCTTCTGCTGCATCTGAGTTTTTCGCTTCATATGGCTATCCTTGTCCCACTCTCATGAATCCGTCTGATCATTTACTGAAAACTATAAACAAGGATTTCGATCAGGACATTGAGGTGGGTTTAGCAGTAACTACAAACTTGCCCACAGAAGAAGTGATTCACATCCTTGTGAACTCATACAAATGCTCTGAGAGAAATCAAGAAGTTAAAAATGAAGTAGCTTTACTATCTGAGAAGAAGAAAAGTTCATCGGATGTGAAGAGGGGACATGCTGGCTTCCTTAACCAGTGCTTTGATCTTACGAAAAGATCGTTCGTCAACATGTTTCGTGATCTGGGCTATTATTGGTTGCGCCTTGTCATATATATTGCATTGGGTATAAGTTTAGCCACTGTTTTCCATAATTTGGGCACAAGTTATGACTCCATTAAGGATCGAGGTTCTCTTGTTGCTTTCATAGTTGGATTCCTCACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTATTTCAACGAGAAAGAGAAAACAGGCATTATGGAGTCACTGCATTTGTGATTGCAAACACCTTATCATCTATCCCATTCTTGGTATTGGTTGCAGTAATTCCTGGGGTTATAGCTTACTACCTTCCTGGTCTTCAGAATGGATTCGAACATTTCGTGTATTTCATTTGTGTTTTATTTTCTAGTCTGATGTTAGTGGAGAGTCTTATGATGATAGTTGCGAGCATTGTTCCCAACTATCTAATGGGCATCATAACTGGTGCTGGAATTCAAGGAGTAATGCTTTTACTAAGTGGCTTCTTTAAGTTGCCAAACGATATTCCCAAGCCAGTTTGGAAATACCCTTTACACTACGTTGCTTTTCATACCTTTGCCAACCAAGGAATGTTCAAGAACGAGTATGAAGGACTAAGATTTGAAGCAGAAAATGATGGAGGAAGCTCACACAGTTACATCACTGGTGAAGAGGTTTTGAGAAATGTGTGGCAAGTTGACATGAGTTACTCAAAGTGGGTCAATCTTGCAATCTTGCTGGGGATGATTGTTCTGTATCGAGTATTATTTTTGGTTATTATCAAGATTGAAGAGAAGTTGAAGACCGTTGTTGTCCCGCTGTCTTCCAAGAGATCAACACAAATCATGGAAAACCCCAACGCCACTCCTTCGCATTCACAAAATACTTAG 1971 0.4033 MDSSEAVLEKSVMNIEGSRVEMEGICLTWKDVWVTASNRNNGSRSILEGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSKMRQSGEILINGHKQRLTYGTSAYVTQDDTLLTTLTVGEAVHYSAQLQLPDTMSKQEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVIKRIASLAQNDHIKRTVIASIHQPSTEVFQLFNNLCLLSSGKTVYFGPASAASEFFASYGYPCPTLMNPSDHLLKTINKDFDQDIEVGLAVTTNLPTEEVIHILVNSYKCSERNQEVKNEVALLSEKKKSSSDVKRGHAGFLNQCFDLTKRSFVNMFRDLGYYWLRLVIYIALGISLATVFHNLGTSYDSIKDRGSLVAFIVGFLTFMTIGGFPSFVEVMKVFQRERENRHYGVTAFVIANTLSSIPFLVLVAVIPGVIAYYLPGLQNGFEHFVYFICVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGVMLLLSGFFKLPNDIPKPVWKYPLHYVAFHTFANQGMFKNEYEGLRFEAENDGGSSHSYITGEEVLRNVWQVDMSYSKWVNLAILLGMIVLYRVLFLVIIKIEEKLKTVVVPLSSKRSTQIMENPNATPSHSQNT 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03004 656 FunFam ABC transporter G family member 11 25 315 - -
Vian1g03004 656 Pfam ABC transporter 49 198 IPR003439 GO:0005524
Vian1g03004 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 18 637 - -
Vian1g03004 656 ProSitePatterns ABC transporters family signature. 170 184 IPR017871 GO:0005524|GO:0016887
Vian1g03004 656 Pfam ABC-2 type transporter 352 563 IPR013525 GO:0016020|GO:0140359
Vian1g03004 656 SMART AAA_5 56 245 IPR003593 GO:0016887
Vian1g03004 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 273 IPR003439 GO:0005524
Vian1g03004 656 Pfam ABC-2 type transporter 230 344 IPR043926 GO:0140359
Vian1g03004 656 Gene3D - 27 284 IPR027417 -
Vian1g03004 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 271 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03004 Vian-Chr1 49485903 49489076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03004 46 234 Calmodulin-binding Proteins AT2G36910 29.744 9.60e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03004 K05681 - gmx:100794527 1064.29