Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03003 ATGAATGTTCTTCTTAGTAAATATGGATCACCCAATAGTAGTCCTGCTCCTTTGATTATGCAGTCGAAGCAGGAGTTGGTTGGCACTGTTGAGGAAGAAAGAAAGGAAGAGGGAATGTTCCTGACATGGGAGGATTTGCAGGTGACAGTTCCAAATGGAAGGAAAGGTAGGAAACCGATTCTTAAGGCTCTAACTGGTTATGCCAAGCCAGGGCAACTTTTGGCAGTAATGGGTCCTTCTGGCTGTGGCAAATCAACACTTCTTGATGCCTTAGCAGGAAGACTGGTTTCAAGCTCAAAGCAAACAGGGAAAATTCTAATTAATGGCCATAAACATGAACTGGCTTATGGAACATCTGCATACGTGACACATGATGATGCTGTGTTATCAACATTAACAGTAGGAGAAGCAGTGTCCTATTCAGCTCATCTCCAATTTCCAGAGTCAATGTCCAACAAAGAGAAGAAAGAGAGAGTAGATTTTACAATCAGACAAATGGGTCTACAAGAGACCACTCACACAAGGATTAAAGGGAAGGCTTCTAAAGGCCTTAGTGAGGGGCAAAAGAGGAGACTTGCCATTTGTATTCAGATTCTTACAAGCCCCAAACTTCTCCTTCTTGATGAACCAACCAGTGGCCTTGACAGTGCAGCTTCCTACTATGTCATGAGCAGAATTGCAAGCCTAAAGATAAGAGATGGCATCAAAAGAACAATTGTTGCATCCATCCATCAGCCCAGCAGTGAAGTTTTTGAGCTTTTTGATCATCTTTGTCTTCTGTCTTCAGGTGAAACAGTATATTTTGGCACCACTTCTGCTGCAACCGAGTTTTTTGCTTCTAATGGCTTTCCTTGTCCACCTCTCCACAACCCTTCTGATCATTTCTTGAGGATCATAAACAAGGATTTCATACTGGATGATAAAGAAGGCTTCCACATAGTAGTACCCGAAGAAGAAGCAGTGGATACCCTTGTGAAGTTTTTTAAATCTTCTGAAATTAGTAACCAAGTTCGGAAAGAAGTAGCAGCAATAGGTGAAAGGGAATATGGTTTCACGGGGAGCAGCAGAACACAAACAGCATTTCTAACTCAGTGTCACGTTCTTCTAAGAAGATCTTCAGTGCACTTGTTTCGTGATGTAACCAATTATTGGTTGCGTCTGGCTATGTTTATTGTAGCAGCTATTAGTATGGGAACTATATTCTTTGACGTTGGTTCAAGTAATTCATCCATTCAGGCTAGAGGGTCACTGGTATCTTTTGTTGCTTCAGTCCTAACTTTCATAACCCTTCTTGGTGGATTTCCTCCATTTTTGGAACAAATTAAGGTATTTGAACGTGAGAGATTGAATGGACACTATGGTGTTGGTGCTTTTGTCATTAGCCATACATTATCACCTATTCCATACATGGCACTGATGTCAGTGATTCCTGGTGTGATCACTTATTACCTTTCTGGACTTCACACAGGACTTGAACGTTGCATCTATTTTTCTAGTGTATTACTTGCATGCATTTTGTGGGTTGAGAGTCTCATGATGGTTGTTTCAAGTATCCTCCCAAATCCCAACACTAACATCACAGTCTCTGGTGGAATTATGGGAGTGATGATTTTAACTGGTGGGTTTTTTCGTCTGCCAAATGATCTCCCCAAACCATTTTGGAAATACCCTATGTATTATGTTTCCTTCCACAAATATGCCTTCCAAGGATTGTTCAAGAATGAGTTCATTGGTCTGAAGTTGAGAAGTGATGAAGATGGAGGAACCTACATAAGTGACAAGGAAGTACTCACAAAGATATGGCAAGTGGAAATGGGTTACTCCAAATGGGTTGATCTTGCTATCTTAATCGGAATAATTGTTTTATATAGACTTATGTTCTTGACAATTACTAAGACTAAGGAGAAAATGAAAATGGAGATAGAAGAAGAATGGAGTGTTCCAAAAGGGAAAGGGAGTAAAAAAGGAGAAAGTTCAGGTTGGAGAGAAGAGGAAGGTATGTGCTTGACATGGAAAAATGTATGGGTCACTGCTTCCATGGGAAAGAATGGAAGCAAGTCAATTCTGCAGGGTTTAACTGGTTATGCCAAGCCAGGCCAACTTTTGGCCATAATGGGTCCTTCTGGTTCTGGAAAGTCTACACTTCTTGATGCCTTGGCAGGGAGATTAGGTTCCGACACAAGGCAAACTGGGGAGATTCTTATCAATGGGAAGAAACAAGCCCTCGCATATGGAACATCAGCATATGTGACACAAGATGATACCTTATTGACAACCTTAACGGTTGGAGAAGCTGTGCACTATTCAGCTCAACTGCAGTTACCTGACACCATGTCAAAACAAGAGAAGAAAGAGAGAGCAGACTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATTGTTTGTTAAAGGAATAAGTGGAGGTCAGAAAAGGAGAGTGAGCATTTGCATTGAGATTCTTACACGACCAAGGCTTCTTTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAAAAGAATCGCTACATTTGATAAAAGAGATGACGTTCGCCGAACTATTATTGCCTCAATCCACCAACCTAGTACTGAAGTTTTTCATCTTTTCGACAACCTTTGTCTTCTATCTTCAGGCAGAACTGTCTACTTTGGACCTGCTTCTGCTGCAAGTGAGTTTTTCGCTTCAAATGGTTTTGCTTGTCCTTCTCTCATGAATCCATCAGATCATATGCTGAAAACCATAAACAAGGATTTCGAACAGGACACTGAGTTAGGAGGGAAGGAAACAATACCCACTGAAGAAGTGATTGAGATCCTTGTAAATTCGTACAAGTCATCTGAAATGAACCAAGAAGTTGAGAAAGAAGTAGCAGAACTAGCTGAAAAGGACACCAGTTCAACAAACAATAAGAGAAAGCATGCTGGCTTTATTAGTCAGTGCTTTTCTCTTACCAAACGATCGTCCATTAACATGTATCGTGATCTCGGCTATTATTGGTTACGCCTTGCCATATATATTGCATTGGCTATAAGTTTAGCCACTATTTTCTATGATTTAGGTACAAGCCACCGCTCAATTCAGGATAGAGGTTCATTTCTTATGTTTGTATCTTCATTCATCACTTTCATGACCATTGGCGGATTCCCTTCTTTTGTGGAGGATATGAAGGTGTTTGAACGTGAGAGACTAAATGGACATTACAGTGTGACTGCATATGTGGTTGGGAACACCTTTTCATCAATTCCATTCTTGTTGTTGGTTTCTGTGATTCCTGGATCTATAGCCTATTACCTTCCTGGTCTTCAGAAAGGCTTCGAACACTTTGTATACTTCATCTGTTCTCTCTTTTCTTGTCTGATGTTGGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTCCCCAACTTTCTAATGGGCATCATAACTGGTGCTGGAATTCAAGGAATGATGATTCTGAGTGGTGGGTTCTTCAGATTGCCGAGAGATCTTCCAAACCCATTTTGGAAATACCCAATGTTCTATTTTGCCTTCCATAGATATGCGTACCAAGGAATGTTCAAAAACGAGTTTGAAGGACTAAGATTCGATTCAGATAATGTCGAAGGTGGCTCCTACGTTACTGGTGAAGAAATTCTAAGAAACACATGGCAAGTAAACATGAGTTACTCAAAGTGGGTTGATCTTGGAATCTTGCTGGGGATGATTTTTCTCTATCGAGTCCTCTTCTTAGTTAACATCAAAACTACTGAGAAGCTGAAACCGATCATTGTATCATTCTTGTCGTCAAGAACTTCTACCAAGCGAACAACGTCGATCATGCAGAATCCCACTGCCACTCCTCTTCAAGAAGTTCAAGTTACTTAA 3903 0.4066 MNVLLSKYGSPNSSPAPLIMQSKQELVGTVEEERKEEGMFLTWEDLQVTVPNGRKGRKPILKALTGYAKPGQLLAVMGPSGCGKSTLLDALAGRLVSSSKQTGKILINGHKHELAYGTSAYVTHDDAVLSTLTVGEAVSYSAHLQFPESMSNKEKKERVDFTIRQMGLQETTHTRIKGKASKGLSEGQKRRLAICIQILTSPKLLLLDEPTSGLDSAASYYVMSRIASLKIRDGIKRTIVASIHQPSSEVFELFDHLCLLSSGETVYFGTTSAATEFFASNGFPCPPLHNPSDHFLRIINKDFILDDKEGFHIVVPEEEAVDTLVKFFKSSEISNQVRKEVAAIGEREYGFTGSSRTQTAFLTQCHVLLRRSSVHLFRDVTNYWLRLAMFIVAAISMGTIFFDVGSSNSSIQARGSLVSFVASVLTFITLLGGFPPFLEQIKVFERERLNGHYGVGAFVISHTLSPIPYMALMSVIPGVITYYLSGLHTGLERCIYFSSVLLACILWVESLMMVVSSILPNPNTNITVSGGIMGVMILTGGFFRLPNDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLRSDEDGGTYISDKEVLTKIWQVEMGYSKWVDLAILIGIIVLYRLMFLTITKTKEKMKMEIEEEWSVPKGKGSKKGESSGWREEEGMCLTWKNVWVTASMGKNGSKSILQGLTGYAKPGQLLAIMGPSGSGKSTLLDALAGRLGSDTRQTGEILINGKKQALAYGTSAYVTQDDTLLTTLTVGEAVHYSAQLQLPDTMSKQEKKERADFTIREMGLQDAINTRIGGLFVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATFDKRDDVRRTIIASIHQPSTEVFHLFDNLCLLSSGRTVYFGPASAASEFFASNGFACPSLMNPSDHMLKTINKDFEQDTELGGKETIPTEEVIEILVNSYKSSEMNQEVEKEVAELAEKDTSSTNNKRKHAGFISQCFSLTKRSSINMYRDLGYYWLRLAIYIALAISLATIFYDLGTSHRSIQDRGSFLMFVSSFITFMTIGGFPSFVEDMKVFERERLNGHYSVTAYVVGNTFSSIPFLLLVSVIPGSIAYYLPGLQKGFEHFVYFICSLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGMMILSGGFFRLPRDLPNPFWKYPMFYFAFHRYAYQGMFKNEFEGLRFDSDNVEGGSYVTGEEILRNTWQVNMSYSKWVDLGILLGMIFLYRVLFLVNIKTTEKLKPIIVSFLSSRTSTKRTTSIMQNPTATPLQEVQVT 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03003 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 278 IPR027417 -
Vian1g03003 1300 Pfam ABC-2 type transporter 363 576 IPR013525 GO:0016020|GO:0140359
Vian1g03003 1300 Pfam ABC-2 type transporter 992 1203 IPR013525 GO:0016020|GO:0140359
Vian1g03003 1300 Gene3D - 659 919 IPR027417 -
Vian1g03003 1300 Gene3D - 28 281 IPR027417 -
Vian1g03003 1300 Pfam ABC-2 type transporter 244 300 IPR043926 GO:0140359
Vian1g03003 1300 Pfam ABC-2 type transporter 872 989 IPR043926 GO:0140359
Vian1g03003 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 669 915 IPR003439 GO:0005524
Vian1g03003 1300 ProSitePatterns ABC transporters family signature. 812 826 IPR017871 GO:0005524|GO:0016887
Vian1g03003 1300 Pfam ABC transporter 690 840 IPR003439 GO:0005524
Vian1g03003 1300 FunFam ABC transporter G family member 11 39 327 - -
Vian1g03003 1300 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Vian1g03003 1300 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 662 1275 - -
Vian1g03003 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 669 905 IPR027417 -
Vian1g03003 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
Vian1g03003 1300 SMART AAA_5 70 264 IPR003593 GO:0016887
Vian1g03003 1300 SMART AAA_5 698 892 IPR003593 GO:0016887
Vian1g03003 1300 FunFam ABC transporter G family member 11 667 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03003 Vian-Chr1 49374997 49464855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03003 688 876 Calmodulin-binding Proteins AT2G36910 28.571 2.63e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03003 K05681 - gmx:100794527 1676.76