Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02988 ATGAAGTTCATTGCACTGAGTTGTACGGTTCGGCGAGCTCTGCTCAATGGCCTCGGTTCGACGGCGGTGATGGCCCAAACTGAAGAAAATGCTTTGTCTGATATGGAACTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGGTCTGGTGCAGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATGTAATAATCAATCCTTTGTCTATGTTGGAATTGACGATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTTGATATATACATGCTATCAGGAGACAAGAGGAATGCTGCTGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTTGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTGTCACAGGTACTTGATGCCTTGGAGCTTAGTAGGCTGACCATGAATACTGTAAAGCAGAATCTTTGGTGGGCTTTCGTCTACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGAACTATTCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCGATACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATATATAGTACATCGCCAAATACCAAAATCCATGTAGATGCTGATCTGGCACAACAAAACCGGAAAACAAGCCGACCATACTAG 1068 0.4204 MKFIALSCTVRRALLNGLGSTAVMAQTEENALSDMELLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKCNNQSFVYVGIDDTLAGLIYFQDEIREDARDVVDRLSKQNLDIYMLSGDKRNAAEHVASLVGIPKDKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQVLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPINGTILTPSIAGALMGLSSIGVMTNSILLRFKFSSKQKQIYSTSPNTKIHVDADLAQQNRKTSRPY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02988 355 Pfam haloacid dehalogenase-like hydrolase 37 221 - -
Vian1g02988 355 FunFam Copper-transporting ATPase PAA1 chloroplastic 10 140 - -
Vian1g02988 355 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 30 142 IPR023299 GO:0000166
Vian1g02988 355 FunFam Copper-transporting ATPase PAA1 chloroplastic 125 276 - -
Vian1g02988 355 NCBIfam HAD-IC family P-type ATPase 35 291 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g02988 355 PANTHER ATP7, ISOFORM B 19 320 - -
Vian1g02988 355 Gene3D - 122 276 IPR023214 -
Vian1g02988 355 PRINTS H+-transporting ATPase (proton pump) signature 209 225 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g02988 355 PRINTS H+-transporting ATPase (proton pump) signature 240 265 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g02988 355 PRINTS P-type cation-transporting ATPase superfamily signature 154 164 - -
Vian1g02988 355 PRINTS P-type cation-transporting ATPase superfamily signature 232 244 - -
Vian1g02988 355 PRINTS P-type cation-transporting ATPase superfamily signature 209 228 - -
Vian1g02988 355 PRINTS P-type cation-transporting ATPase superfamily signature 132 143 - -
Vian1g02988 355 SUPERFAMILY HAD-like 96 315 IPR036412 -
Vian1g02988 355 Gene3D - 20 117 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02988 Vian-Chr1 49073029 49088924 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02988 36 319 Primary Pumps ATPases AT1G63440 38.908 7.98e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02988 K17686 - gmx:100796210 576.63