Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02985 ATGGAGGAAAGACATAGACAATTAAGAGAAAGTGCAAAGGCACCGTGGATCCATGTCTTTCATTCCATTGGGTTTCATCTATCATTATCTTTATTTACATTGCTTGGTCCTGGCCGCCAGCTTATCCTTGATGGTTTAAAAAGCCTTCTTAAAACAACACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTGTCTTCATTTACTGTCAGCTCATTTGCTGCCTTAGTTCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAGCCAATTATGCTAATTGCATTTGTGTTGCTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGGCAGGACTTCTTAGTTTGTTGCCACCAAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGCTGGCTCAGTTGTTGAAGTTCCTTCTGAAAGTCTTTCTATTGGAGACCAAATTATTGTGCTGCCTGGAGACCGTATTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTGTAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTGCCTGGGGTGGCTGGACATTTCACTTATGGAGTGATGGCAGCCTCTGCTGCTACTTTCACATTCTGGAGTCTGTATGGGGCACACATTTTGCCTCCTGCTTTATATCAAGGAAGTTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGCGTTCTGGTTGGAACATCTCTGGGGGCTAAAAGAGGTTTACTTTTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTGACAAACATTATCACTGCCCCATGCATGAAAAGTGCTATTTCAAGCCAAACTGAAGAAAATGCTTTGTCTGATATGGAACTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGGTCTGGTGCAGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATGTAATAATCAATCCTTTGTCTATGTTGGAATTGACGATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTTGATATATACATGCTATCAGGAGACAAGAGGAATGCTGCTGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTTGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTGTCACAGGTACTTGATGCCTTGGAGCTTAGTAGGCTGACCATGAATACTGTAAAGCAGAATCTTTGGTGGGCTTTCGTCTACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGAACTATTCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCGATACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATATATAGTACATCGCCAAATACCAAAATCCATGTAGATGCTGATCTGGCACAACAAAACCGGAAAACAAGCCGACCATACTAG 1887 0.4208 MEERHRQLRESAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKTTPNMNTLVGLGALSSFTVSSFAALVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMAGLLSLLPPKARLLVNNEETEAGSVVEVPSESLSIGDQIIVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKVPGVAGHFTYGVMAASAATFTFWSLYGAHILPPALYQGSSVSLALQLACSVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIITAPCMKSAISSQTEENALSDMELLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKCNNQSFVYVGIDDTLAGLIYFQDEIREDARDVVDRLSKQNLDIYMLSGDKRNAAEHVASLVGIPKDKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQVLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPINGTILTPSIAGALMGLSSIGVMTNSILLRFKFSSKQKQIYSTSPNTKIHVDADLAQQNRKTSRPY 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02985 628 Gene3D - 106 251 - -
Vian1g02985 628 Pfam haloacid dehalogenase-like hydrolase 265 494 - -
Vian1g02985 628 CDD P-type_ATPase_HM 15 588 - -
Vian1g02985 628 ProSitePatterns E1-E2 ATPases phosphorylation site. 271 277 IPR018303 -
Vian1g02985 628 PANTHER ATP7, ISOFORM B 192 593 - -
Vian1g02985 628 PRINTS P-type cation-transporting ATPase superfamily signature 405 416 - -
Vian1g02985 628 PRINTS P-type cation-transporting ATPase superfamily signature 427 437 - -
Vian1g02985 628 PRINTS P-type cation-transporting ATPase superfamily signature 482 501 - -
Vian1g02985 628 PRINTS P-type cation-transporting ATPase superfamily signature 505 517 - -
Vian1g02985 628 PRINTS P-type cation-transporting ATPase superfamily signature 175 189 - -
Vian1g02985 628 SUPERFAMILY HAD-like 267 588 IPR036412 -
Vian1g02985 628 NCBIfam HAD-IC family P-type ATPase 308 563 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g02985 628 SUPERFAMILY Calcium ATPase, transduction domain A 136 191 IPR008250 -
Vian1g02985 628 Gene3D - 280 413 IPR023299 GO:0000166
Vian1g02985 628 FunFam Copper-transporting ATPase PAA1 chloroplastic 280 413 - -
Vian1g02985 628 FunFam Copper-transporting ATPase PAA1 chloroplastic 398 549 - -
Vian1g02985 628 Pfam E1-E2 ATPase 120 192 - -
Vian1g02985 628 SFLD p-type atpase 252 532 IPR044492 -
Vian1g02985 628 Gene3D - 260 532 IPR023214 -
Vian1g02985 628 SFLD C1.7: P-type atpase like 252 532 - -
Vian1g02985 628 PRINTS Copper-transporting ATPase signature 555 569 - -
Vian1g02985 628 PRINTS Copper-transporting ATPase signature 89 108 - -
Vian1g02985 628 PRINTS Copper-transporting ATPase signature 459 476 - -
Vian1g02985 628 PRINTS Copper-transporting ATPase signature 516 530 - -
Vian1g02985 628 PRINTS Copper-transporting ATPase signature 41 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02985 Vian-Chr1 49011532 49046119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02985 38 592 Primary Pumps ATPases AT1G63440 33.386 6.78e-86 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02985 K17686 - gmx:100796210 1060.44