Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02982 ATGTCTCACTTCGGACGCTCGGGTCCTCCTGACATTTCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGCACCACAGCCGATGACCTATTTCCTCTATTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAGTCCAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCTGATGAGGCTCAAAAGGCCGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCGAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACGGCCCAGAGATCAAGGCACCGGTCAAGAAGCCGTAGTCCCAGGAAAAGGTATCGTGATGACAGAGACAGAGACAGGGATTATAGAAAGAGAAGTCGCAGTAGAAGCTATGATAGGTATGAACGTGACAAGCACCGTGGGAGAGACAAAGATTATCGTCACAGAAGCAGGAGCCGTAGTACCAGTCTTGATTACAAGGGTCGTGGTAGGGCACGCTATGATGATGAGCATCATAGTAGGAGCCGGAGTAGATCAGTTGACAGTCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAAGAGTCCTTCCTTACAGCGGAGCACTTCTCCCCAAAGGAGTACTTCCCCTAGGAAAAGCCCAAGGGGTGAAAGTCCAGCAAATCGTAGCCGTGATGGACGTTCTCCACGTTCTCCTTCCCCGCGCAGTGTATCACCACGTGGTCGCCCTGAAGCTTCACGAAGCCCTTCCCCTCGAAATTCGAATGGTGATGAATAA 819 0.5067 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRHRSRSRSPRKRYRDDRDRDRDYRKRSRSRSYDRYERDKHRGRDKDYRHRSRSRSTSLDYKGRGRARYDDEHHSRSRSRSVDSRSPARRSPSPRKSPSLQRSTSPQRSTSPRKSPRGESPANRSRDGRSPRSPSPRSVSPRGRPEASRSPSPRNSNGDE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02982 272 MobiDBLite consensus disorder prediction 124 197 - -
Vian1g02982 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vian1g02982 272 MobiDBLite consensus disorder prediction 198 230 - -
Vian1g02982 272 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vian1g02982 272 Gene3D - 4 104 IPR012677 -
Vian1g02982 272 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 258 - -
Vian1g02982 272 SMART rrm2_1 17 90 IPR003954 GO:0003676
Vian1g02982 272 CDD RRM_SRSF2_SRSF8 18 90 - -
Vian1g02982 272 MobiDBLite consensus disorder prediction 102 272 - -
Vian1g02982 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Vian1g02982 272 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vian1g02982 272 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02982 Vian-Chr1 48966982 48969527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02982 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.92e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02982 K12891 - gmx:100778928 369.392