Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02971 ATGGATGCTTTATCTTTAAGTTCAAGTTCAAGCCTAAACATGTACAAGCCCTTTCAATCTCATGGCCTTCCACAGCAAAGAGTTTCCACTGTGAAGTTTGGTACTGTTTCATGCAGAGCCACAACCCAAGAAAACTTGTACAAGGTACTGTCTGTGAGTCCGGAAAGAGCAACAATGGATGAGATTAAGAGGGCTTATAGATCTATGGCTCTAAGGTACCACCCTGATGTGTGCCACGATCCCACCATGAAAGAGGAGTCTACGAGGCTGTTTGTGCAGGTGAATGCAGCTTACAAGACCTTGTCCAATCCAAGGCTTCGAGAACAGTACGACAGTGAATTGGGTCTGAGAAGCCAAGTCATGAGTGTGGGTAGTGATCATGAAAGATGGGGAAGTGTGAGTGTTTGTAGTGATTTTGAGAGATGGGGAAGTAAGTTTCAGGAGGAAGTGATTGAGGTGAAGACAAGGTCTCGTAGACGAATGGGACAAAAGGGAGGATCATCAGCTACCAGAATGAGAACACAAAACATGAAAGACAGACATTGA 546 0.4469 MDALSLSSSSSLNMYKPFQSHGLPQQRVSTVKFGTVSCRATTQENLYKVLSVSPERATMDEIKRAYRSMALRYHPDVCHDPTMKEESTRLFVQVNAAYKTLSNPRLREQYDSELGLRSQVMSVGSDHERWGSVSVCSDFERWGSKFQEEVIEVKTRSRRRMGQKGGSSATRMRTQNMKDRH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02971 181 PRINTS DnaJ domain signature 48 66 IPR001623 -
Vian1g02971 181 PRINTS DnaJ domain signature 66 81 IPR001623 -
Vian1g02971 181 PRINTS DnaJ domain signature 86 106 IPR001623 -
Vian1g02971 181 CDD DnaJ 45 103 IPR001623 -
Vian1g02971 181 SUPERFAMILY Chaperone J-domain 26 110 IPR036869 -
Vian1g02971 181 MobiDBLite consensus disorder prediction 156 181 - -
Vian1g02971 181 ProSiteProfiles dnaJ domain profile. 45 114 IPR001623 -
Vian1g02971 181 Gene3D DnaJ domain 32 129 IPR036869 -
Vian1g02971 181 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 30 179 - -
Vian1g02971 181 SMART dnaj_3 44 106 IPR001623 -
Vian1g02971 181 Pfam DnaJ domain 45 111 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02971 Vian-Chr1 48764154 48764699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02971 47 121 C2H2 Transcription Factor Family AT1G74250 38.961 1.83e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02971 - - gmx:100811478 284.648