Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02967 ATGCAATTTCAAACGGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATCTGCTTCGCCTGCATGGTTTTTGCATGACATCTACTGAACGTTTGCTTGTGTACCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCGGAAGCACAACCACCACTTGAATGGTCAAAACGGAAGGGTATTGCTCTAGGAGCTGCAAGGGGCCTTGCTTATTTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTAATGAATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATTGGCCACATTGCTCCTGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTAAAAGGACTATTGAAAGAAAAGAGGTTGAAGACACTGGTGGATGAAGATTTGGATGGAAAATATGAGGAGGAGGAAGTAGAAGAGTTGATCCAAGTGGCCTTGCTATGCACACAAAGCTCCTCTTTCGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAAAAAGAGGATATAATCCAACAAAATTTTGACCCCTCCAGTCTCCACCATGCTTACTGGCCATTATTAAACTCATCCTCAAATATTCCCCCAGATGAACTGTCAGGACCTAGATGA 861 0.4228 MQFQTEVEMISMAVHRNLLRLHGFCMTSTERLLVYPFMVNGSVASCLRDRPEAQPPLEWSKRKGIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKRLKTLVDEDLDGKYEEEEVEELIQVALLCTQSSSFERPKMSEVVRMLEGEGLAEKWEKWWQKEDIIQQNFDPSSLHHAYWPLLNSSSNIPPDELSGPR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02967 286 FunFam Somatic embryogenesis receptor-like kinase 1 38 256 - -
Vian1g02967 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Vian1g02967 286 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02967 286 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Vian1g02967 286 PIRSF ILK 1 257 - -
Vian1g02967 286 Gene3D Transferase(Phosphotransferase) domain 1 39 256 - -
Vian1g02967 286 SMART serkin_6 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02967 286 Pfam Protein tyrosine and serine/threonine kinase 2 235 IPR001245 GO:0004672|GO:0006468
Vian1g02967 286 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 246 - -
Vian1g02967 286 SUPERFAMILY Protein kinase-like (PK-like) 2 260 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02967 Vian-Chr1 48720939 48722635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02967 1 286 Receptor kinase-like Gene Family AT4G33430 81.250 1.07e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian1g02967 PK_Tyr_Ser-Thr 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02967 K13416 - gmx:100804180 508.064