Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02966 ATGATCATTGTTGAATCTAGTGACTTATCGTACAACAACTTAACAGGGATTGTCCCAGCCAATGGTTCATTTTCACGTTTTACTCCCATCAGTTTTAGCAATAATACTTACTTGGTGCAAGCCATTCCAATTTCACCACCCGCCACACATAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGCGCTGCACTGTTGTTTGCAGCTCCAGTAATTGCATTTGTTTACTGCAAAAGAAGGAAGCCACCAGATTATTTCTTTGACGTTGCAGCTGAGGAGGACCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCACTGCATGAACTGCTAGTTGCAACAGATGGTTTTAATAACAAAAACATTATTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGTATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCTTGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCTTATCTGCATGATCATTGTGACCCGAAGATTATTCATCGTGATATCAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCGGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGCCATATACCACCAGAGTATCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGCGTGATGCTTCTTGAGATAATAACTGGACAGAGGGCTTTCAATTTAGCCCGACTTGCCATTAGTGATGAGGTTATGTTGCTTGAATGGGTGAAAGCACTTCTGAAGGAGCAGAAGTTAGAGACACTGGTGGATGAAGATTTACAGGGAGATTATGATGAGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTGTGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGGTAGAAGGGCAAGGTTTGGAAGAAAAGTGGGACCAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACGTTGGTTACGACTCAACTTCAAATATTCAACCAGATGAACTGTCTGGTCCTAGATGA 1347 0.4098 MIIVESSDLSYNNLTGIVPANGSFSRFTPISFSNNTYLVQAIPISPPATHKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIAFVYCKRRKPPDYFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNIIGKGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISLAVHRNLLRLIGFCMTTTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCDPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFNLARLAISDEVMLLEWVKALLKEQKLETLVDEDLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMVEGQGLEEKWDQWGKKEDMIQKNYNPFNLYVGYDSTSNIQPDELSGPR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02966 448 SMART serkin_6 127 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02966 448 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Vian1g02966 448 Pfam Protein kinase domain 128 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02966 448 ProSiteProfiles Protein kinase domain profile. 127 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02966 448 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Vian1g02966 448 Gene3D Transferase(Phosphotransferase) domain 1 204 421 - -
Vian1g02966 448 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 411 - -
Vian1g02966 448 FunFam Somatic embryogenesis receptor kinase 1 96 203 - -
Vian1g02966 448 Gene3D Phosphorylase Kinase; domain 1 96 203 - -
Vian1g02966 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vian1g02966 448 FunFam Somatic embryogenesis receptor-like kinase 1 204 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02966 Vian-Chr1 48711262 48715122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02966 1 448 Receptor kinase-like Gene Family AT4G33430 68.943 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian1g02966 Pkinase 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02966 K13416 - gmx:100804180 678.322