Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02960 ATGGCAATGCATGCATCTGGCATCCTTTTGGTTGTTCTGTACTCTCTGTTGAGATTTGCATTGTCGGATATCAATTTTGTAAAATATGATTTTCTGCAAGCAGGCTTGAAAATGGATGGAGCTTATGTGAGGCCAAATGGCATACTTACCTTGACAAATGATTCCTCAAAAATCTTTGGCCATGCATTCTATCCATCTCCTTTGCCATTCAAATCTAGCAAAAACAAATCCATTGTTTCAACCTTTAGCACTACCTTTGTGTTTTCCATAGTTCCTAAGTACCCAGATCTTGGAGGACACGGTTTTGCATTCGTCCTAATATCTACCAACGAACCAAAAGGGTGCCTCACAAATCAATATTTAGGCCTCCCAAATGAGACAAGTAATAAGGAACTCTCAACCCGGTTCCTAGCTGTAGAGTTTGATGGGGTACAGAACCTTGAACTTGAAGACATCGATGATAATCACGTGGGGATAGATATATCCAGCCTCATCTCTAACACATCTAAGTCAGCAGCATACTATTTAGAAAGAAATGGCCAAGAAGATCACAGCAAGAACATTTCCTTCAGTTTGAAGAGTGGAAAACCCATTCAAGCATGGGTTGATTACAATGAAGGGGAGATGATGATGCATGTCACAGTTTCTCCTTTTGGCATGCCAAAGCCATATTTTCCTTTGATATCATTTCGCATAGACCTATCCTTGGTGTTTGATGATTATATGTATGCAGGTTTTTCTGCTTCCAACGGTCTGCTGGTAGCTGAGTATAATATACATGGTTGGAGCTTCAAAGTAGGAGCAGCAGCACAAGAGCTAGAAAAATCATCCGTGCCACTTATTCGGTCAAATACTTCTATTAAGGTGGTGCACAAAAAACACTTTGCAGTAGGTATTACTCTAGCAAGTGCATCTCTTTTTATATTGACAATTATAGGAGCTCTTGCCCTGCACAGATTAAGAAATAGGGAGGAGGTTTTAGAGGATTGGGAACTCGAATTTGCCACACATAAATTTAAATATTCTGAGCTCCATTCAGCTACAGGAAGGTTTGGGGACAGAAACCTTATTGGGTATGGAGGTTTTGGTAAAGTCTACAGAGGTGTAATCCCTAGCACAGGACTAGAAGTAGCCGTAAAGCGGGTTGCTCCTGATTCAAGGCAAGGAATCAGAGAATTTGTAGCGGAAATAACAAGCATGACACAGCTTAAGCATAGAAATTTGGTGCAATTACATGGGTGGTGCAGGAAGCAGGATGAACTCCTCATTGTGTATGATTATCTACCAAATGGAAGCCTAGACAAGCTTCTGTTTGAAAATGATCATCAAAAGAAGAAATTACTAACTTGGGAACAAAGATACAAAATCATTACTGGAGTTGCCCAAGGGCTGTTGTATCTCCATGAAGAAAGTGAGGTGCAGGTTGTTCACAGAGATGTAAAGCCAAGCAATGTCCTGATAGATGCAGATCTCCAACCAAAGCTTGGAGATTTCGGTCTTGCAAGGACTTACGAGCATGGAATCAATCCACAGACAACAAGCGTTGTGGGAACATTAGGCTACATGGCCCCTGAGCTCACCAAGACTGGGAAAGCAAGAACAAGCACAGATGTATATGGGTATGGAGTACTCATTTTGGAAGTAGCATGTGGAAGGAGGCCAATAGAGCCCCAAAAGAATCCCGAGGAACTGGTATTGGTAGATTGGGTTAGAGATCTACATCACCGAGGACAGATCTGCAGAGCTATTGACCCCAGTTTATATGAGTATGACAAAGATGAAGCTCAGCTTGTGCTTAGTCTTGGATTGCTTTGCTCTCATCCCAATCCTCATTACAGACCTAATATGAGAAGGATTGTCCAGTTCCTTATGGGAGAAATTATCCTTTCTCCACTTCCTCCTGACATTCACAGTGAAGGTCCAAGAGAAATAGCAAAATGTCCCTGCAACTTTCCATATGATTCTCAACCTTCAAGTTCTGTGGTGTCTTCGTCAAACTATTATAGTCTTACATGCTTTGATGAGGTGGTCTACCCTGCTGAACTCACTGGTATCACTTCATAG 2064 0.4162 MAMHASGILLVVLYSLLRFALSDINFVKYDFLQAGLKMDGAYVRPNGILTLTNDSSKIFGHAFYPSPLPFKSSKNKSIVSTFSTTFVFSIVPKYPDLGGHGFAFVLISTNEPKGCLTNQYLGLPNETSNKELSTRFLAVEFDGVQNLELEDIDDNHVGIDISSLISNTSKSAAYYLERNGQEDHSKNISFSLKSGKPIQAWVDYNEGEMMMHVTVSPFGMPKPYFPLISFRIDLSLVFDDYMYAGFSASNGLLVAEYNIHGWSFKVGAAAQELEKSSVPLIRSNTSIKVVHKKHFAVGITLASASLFILTIIGALALHRLRNREEVLEDWELEFATHKFKYSELHSATGRFGDRNLIGYGGFGKVYRGVIPSTGLEVAVKRVAPDSRQGIREFVAEITSMTQLKHRNLVQLHGWCRKQDELLIVYDYLPNGSLDKLLFENDHQKKKLLTWEQRYKIITGVAQGLLYLHEESEVQVVHRDVKPSNVLIDADLQPKLGDFGLARTYEHGINPQTTSVVGTLGYMAPELTKTGKARTSTDVYGYGVLILEVACGRRPIEPQKNPEELVLVDWVRDLHHRGQICRAIDPSLYEYDKDEAQLVLSLGLLCSHPNPHYRPNMRRIVQFLMGEIILSPLPPDIHSEGPREIAKCPCNFPYDSQPSSSVVSSSNYYSLTCFDEVVYPAELTGITS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02960 687 CDD lectin_legume_LecRK_Arcelin_ConA 25 266 IPR001220 GO:0030246
Vian1g02960 687 SUPERFAMILY Protein kinase-like (PK-like) 334 662 IPR011009 -
Vian1g02960 687 CDD STKc_IRAK 357 625 - -
Vian1g02960 687 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Vian1g02960 687 PANTHER - 42 627 - -
Vian1g02960 687 Gene3D - 22 288 - -
Vian1g02960 687 FunFam L-type lectin-domain containing receptor kinase S.4 428 635 - -
Vian1g02960 687 Pfam Protein kinase domain 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02960 687 FunFam receptor-like protein kinase FERONIA 318 427 - -
Vian1g02960 687 Gene3D Transferase(Phosphotransferase) domain 1 428 627 - -
Vian1g02960 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vian1g02960 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 269 IPR013320 -
Vian1g02960 687 FunFam L-type lectin-domain containing receptor kinase S.4 22 272 - -
Vian1g02960 687 Gene3D Phosphorylase Kinase; domain 1 335 427 - -
Vian1g02960 687 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02960 687 SMART serkin_6 351 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02960 687 Pfam Legume lectin domain 35 277 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02960 Vian-Chr1 48626756 48628819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02960 21 623 Receptor kinase-like Gene Family AT3G55550 47.204 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g02960 Pkinase 5.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02960 - - gmx:100801966 1116.29