Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02959 ATGGCAGATAACAATGTCAACCTCCCACCCGGCTTTCACTTTTATCCCACAGATGAAGAGCTTGTCGTTCATTTCCTCCAAAGAAAGGCAAATCTTCTACCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCTTATGATCCTTGGGAACTTCACGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGACACAAAATAGGGTCACTGGGAATGGCTATTGGATGCCAATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTTTTCCATGTGGGAGAAGCCCCTGATGGTAACACCACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCCTCTAGCAGATCATCCAGAAGAAGACCACAACCAAAACCGGATCACAGTAAATGGGTGATATGTCGAGTTTATGAGCGGGATAACGATGATGATGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAATAAGTTTGCCAAATTAA 573 0.4346 MADNNVNLPPGFHFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVITSSSNKRVGMKKYYVFHVGEAPDGNTTNWIMQEYRLLDSASSSRSSRRRPQPKPDHSKWVICRVYERDNDDDDGDGTELSCLDEVFLSLDDLEEISLPN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02959 190 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Vian1g02959 190 PANTHER NAC TRANSCRIPTION FACTOR 56 8 162 - -
Vian1g02959 190 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vian1g02959 190 FunFam NAC domain-containing protein 104 17 161 - -
Vian1g02959 190 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Vian1g02959 190 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02959 Vian-Chr1 48605025 48606002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02959 6 160 NAC Transcription Factor Family AT1G52890 44.172 3.63e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g02959 NAM 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02959 - - gmx:100788893 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02959 1 48605025 48606002 Vian1g02959 1 48605025 48606002 ECH
Vian1g02959 1 48605025 48606002 Vian6g02000 6 37119727 37120255 PCT