Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02957 ATGCAAGAAGCCATTAAACCCGACTCCGCTGCTCCCGCCTTTCCTCCACCGACCCCTGCAACAATGGTGAACGTTCCAAAGACGAAGAAAACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACCCTCCACAAGGTCACCCAATACAAGAAGGGTAAGGACAGTATCGCCGCTCAGGGAAAACGCCGTTATGACCGTAAACAGTCCGGTTACGGTGGACAGACCAAGCCCGTTTTCCACAAAAAGGCCAAAACAACCAAGAAAATTGTGCTGAGGCTCCAGTGCCAGGGATGCAAACATGTGTCCCAACATCCAATCAAGAGGTGCAAGCACTTCGAAATCGGCGGCGACAAGAAGGGAAAGGGAACCTCTCTGTTTTAG 381 0.5171 MQEAIKPDSAAPAFPPPTPATMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02957 126 MobiDBLite consensus disorder prediction 49 69 - -
Vian1g02957 126 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 22 126 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vian1g02957 126 MobiDBLite consensus disorder prediction 49 83 - -
Vian1g02957 126 ProSitePatterns Ribosomal protein L44e signature. 84 95 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vian1g02957 126 Gene3D - 22 126 - -
Vian1g02957 126 MobiDBLite consensus disorder prediction 1 23 - -
Vian1g02957 126 SUPERFAMILY Zn-binding ribosomal proteins 23 115 IPR011332 GO:0006412
Vian1g02957 126 FunFam 60S ribosomal protein L44 22 126 - -
Vian1g02957 126 Pfam Ribosomal protein L44 40 115 IPR000552 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02957 22 126 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 2.40e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02957 K02929 - apan:127241117 225.713