Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02952 ATGTCTGATGTGGAAGAGTATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTCGGCAAGCTTGTTGAGGCAAAGGTTGTTGTTGACAAGTTCTCTGGGCGTTCACGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGGACTATTACTGTTGATAGAGCCCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGGGGCCGAGGATCTAATGGTGGTGAATGCTTTAAATGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGCGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGGTGGTGGTGGTAGTCACTATGGTCCAGATAGAAATGCAGATCGTTCTTCAGGGGGCCGCAACAGGGATGGCGGTAGTCATGGAGATTCCGGAAATGATCGATATCATCGTGATCGTGCAGGACCGTATGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA 639 0.4851 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGGRYGGRESRYGGSSGGGGSHYGPDRNADRSSGGRNRDGGSHGDSGNDRYHRDRAGPYERERRGSGGFR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02952 212 MobiDBLite consensus disorder prediction 76 212 - -
Vian1g02952 212 Gene3D - 2 117 IPR012677 -
Vian1g02952 212 MobiDBLite consensus disorder prediction 88 111 - -
Vian1g02952 212 CDD RRM2_NsCP33_like 8 83 - -
Vian1g02952 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Vian1g02952 212 SUPERFAMILY Retrovirus zinc finger-like domains 114 140 IPR036875 GO:0003676|GO:0008270
Vian1g02952 212 Gene3D - 118 180 - -
Vian1g02952 212 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Vian1g02952 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vian1g02952 212 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 206 - -
Vian1g02952 212 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Vian1g02952 212 MobiDBLite consensus disorder prediction 171 212 - -
Vian1g02952 212 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Vian1g02952 212 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vian1g02952 212 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Vian1g02952 212 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02952 Vian-Chr1 48395434 48396369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02952 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 4.25e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02952 - - gmx:100815224 301.212