Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02947 ATGGCTGGAAGTGTTGATGTTTTAGCTCCTGATTGCAGCATTAATGGAACAACGAAATCTTTGCCTGAGGTTCTCAATTCCACGGTTTTTATATCAGATCATGTGCCAATCGTAGCCGGAGAGAATGGCATTGGCAAGGGAGAGGCTCAGAATGGTACAGAAAATGGGCAGAGAAAGATTGTCCTGGGAAGAAATATTCATACCATGTGCCTTGAAATTTCGGAGCCTGATATAGATGATGAGGTTACTGGTGAAAGGGAAGCTTATATGGCAAGTGTGTTGGCTAAATACAAAAAAACTCTGACTGAAAGGACCAAATATCATTTAGGTTACCCCTATAATTTGGATTTTGACTATGAGGCACTCTCTCAACTTCAGCACTTTTCCATCAACAACTTGGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTTGCACGGTTGTGGGAATTGGAGAAAGATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAGGGCAATCTCCATGGAATCCTTGTTGGGAGAGAGGTTTTCCCAGATGGGATTTTATATGCCTCACAGGAGTCACATTATTCTGTTTTCAAAGCTGCTCGTATGTACAGAATGGAATGTGTGAAGATTGACACTCTTTGCTCTGGTGAGATTGATTGTGATGATTTCAAGGCCAAGCTTCTTTGTCACACGGACAAACCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGACCTTGATCTGGTTATAAAGAAACTTGAGGAAGCAGGATTTTCACATGACAGGTTCTACATTCATTGTGATGGAGCTCTGTTTGGTCTCATGATACCTTTTGTGAAACGTGCTCCAAAAGTTTCTTTCAAGAAGCCTATAGGGAGTGTGAGTGTTTCTGGGCACAAGTTCGTGGGGTGCCCAATGCCCTGTGGCGTGCAGATAACGCGATCGGAGCATGTGAAGGCTCTTTCGAGGAACGTGGAGTATCTTTCTTCGCGGGACGCGACGATCATGGGAAGCAGGAACGGGCACGCGCCCATATTCCTCTGGTACAATCTAAACATGAAAGGGTACAGAGGTTTTCAGAAAGAGGTGCAGAAGTGTTTGCGCAATGCACACTACTTCAAAGGTAGGCTTGTGGATGCAGGCATTGGAGCAATGCTGAACGAGCTGAGCAGCACCGTTGTGTTTGAGAGACCACATGATGAGGAGTTCGTGCACAGGTGGCAGTTGGCATGCCAAGGAAACATCGCTCATGTGGTGGTGATGCCAAATGTCACCATAGAGAAGCTTGATGATTTTCTGAATGAACTCGTGCAGAAGCGTCAAGAGTGGTTCCGAGATGGCAAGTTACAACCTTATTGCATAGCTTCTGCTGTCGGACACAAGAATTGTCTCTGTGCTATCCATAGGTGA 1458 0.4506 MAGSVDVLAPDCSINGTTKSLPEVLNSTVFISDHVPIVAGENGIGKGEAQNGTENGQRKIVLGRNIHTMCLEISEPDIDDEVTGEREAYMASVLAKYKKTLTERTKYHLGYPYNLDFDYEALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKIDTLCSGEIDCDDFKAKLLCHTDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMIPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRSEHVKALSRNVEYLSSRDATIMGSRNGHAPIFLWYNLNMKGYRGFQKEVQKCLRNAHYFKGRLVDAGIGAMLNELSSTVVFERPHDEEFVHRWQLACQGNIAHVVVMPNVTIEKLDDFLNELVQKRQEWFRDGKLQPYCIASAVGHKNCLCAIHR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02947 485 Gene3D - 123 367 IPR015421 GO:0003824
Vian1g02947 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 402 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vian1g02947 485 Gene3D Aspartate Aminotransferase, domain 1 368 457 IPR015422 GO:0003824
Vian1g02947 485 SUPERFAMILY PLP-dependent transferases 85 459 IPR015424 -
Vian1g02947 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Vian1g02947 485 PANTHER - 51 485 - -
Vian1g02947 485 FunFam Serine decarboxylase 1 124 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02947 Vian-Chr1 48275320 48277752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02947 208 390 Calmodulin-binding Proteins AT1G65960 26.042 8.17e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02947 K25193 - gmx:100792053 904.049