Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02943 ATGCAAGAGTTGAAGCCTCCCTTCCTGATGATGCTGGTGCAGGTTGCATACACGGGAAATACTGTGATTGCTAGCCTTGCCATAACTGATGGAATGAGCATTAGAGTATTCAGTGCCTACCGACACATTTTTGGAGCTGTTATCACTTTTATTCTTGCTTTTATTTTCGAAAGGGGGAGTTTATTCCAAAATCCTTTTTTCAACGCCATAGCGTTGGTATCAGCAACATATGCTAACGCTGTTTTCAACATGGTTCCTGTGGTCACTTTCGTCTTCTCCTTTTTGTACGGCTACGAAAAGTTAAACTTACGAACTGTAACAGGAAAAACTAAGGATAACGATCAGAAAGGAGCATCAGATGGAAAACAGTGGATAGGTGTTCTAAGTGGTATTGGATGTTGCTTCAGTTTTTCAGTATGGCTCATCATTCAGGCTAAGCTGAGTAAGGAATATCCAAGCCACCACTCAAGTACATCGTTAATGAATTCAATGGCAGCAGTACAAGCCACACTCTTTGCCCTTTGTGTTGAAAAAGATTGGAATCAATGGAAGTTGCCTTCAGCTATTAGGATTTTGGCGGCAATCTATTCGGGAATTGCAGTCACTACATTTGTTAATATTGTCACTTCGTGGTGTGTACGGAAGAAAGGTCCATTATATGCATCTGTATTCAATCCCCTTACCCTTGTGCTCGTGGCTACCACCGCTCCACTCTTATTACAAGAGAAACTATACCTTGGAAGTGTACTTGGCGCAGCGCTAATTGTGTGTGGCTTGTACATGGTGCTGTGGAGTAAAAGCAAAGAAATGAAACAACAAACTGATTTGGTGTCATCAGAGACAGAATTAAGTAGTACGACTGAGGTTGTTGTAGTGTCCACCACCAATAAGAATGAGTTAGCAATAACAGTCATAGTACTTGGCGCATCGCTAATTGTGTGTGGCTTGTACATGGTGCTGTGGAGTAAAAGCAAAGAAATTAAACCACAAACTGATTTGGTGTTATCAGAGACAGAATTAAGTACGACTGAGGTTGTTGTAGTCTCTGCCAACGATAAGAGTGATCATGTTAGCAATAACCAGGTGAATAGTAATAGCAACACTGTAAACAAAGGCTCTTAA 1122 0.4109 MQELKPPFLMMLVQVAYTGNTVIASLAITDGMSIRVFSAYRHIFGAVITFILAFIFERGSLFQNPFFNAIALVSATYANAVFNMVPVVTFVFSFLYGYEKLNLRTVTGKTKDNDQKGASDGKQWIGVLSGIGCCFSFSVWLIIQAKLSKEYPSHHSSTSLMNSMAAVQATLFALCVEKDWNQWKLPSAIRILAAIYSGIAVTTFVNIVTSWCVRKKGPLYASVFNPLTLVLVATTAPLLLQEKLYLGSVLGAALIVCGLYMVLWSKSKEMKQQTDLVSSETELSSTTEVVVVSTTNKNELAITVIVLGASLIVCGLYMVLWSKSKEIKPQTDLVLSETELSTTEVVVVSANDKSDHVSNNQVNSNSNTVNKGS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02943 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 183 268 - -
Vian1g02943 373 Pfam EamA-like transporter family 125 263 IPR000620 GO:0016020
Vian1g02943 373 PANTHER WAT1-RELATED PROTEIN 6 275 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02943 Vian-Chr1 48206297 48212223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02943 2 293 Nodulin-like Gene Family AT1G68170 30.398 1.75e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02943 - - var:108326681 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02943 1 48206297 48212223 Vian1g02943 1 48206297 48212223 ECH
Vian1g02943 1 48206297 48212223 Vian6g02019 6 37292449 37294446 PCT
Vian6g02018 6 37285267 37286987 Vian1g02943 1 48206297 48212223 PCT