Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02939 ATGCGTCCACCGCGAAAGAAGGTGAATTTTCGCCCCGGCGACAAGGTGGAGGTGTGTAGCAACGAGGAGGGCTTCTTCGGCTCCTACTACCTCGCCACCGTCGTGTCGGCTCTCGACAACGGTCTCTACGTCGTACGCTACGACACGCTGCTCGAAGACGATGAATCCAAGCCGCTCACGCTGACCGTCTTCCCCAGAGAGCTCCGCCCTAAGCCTCCGCGCATCGCCACCTCCTCCTCCTTCGCGCGCTACCAGCGCGTCGACGCCTTCGACAACGACGGCTGGTGGGTCGGCGAAATCACCGGCAAAGTCGACCTCGACCGCTACTATGTATACTTTTCCACCACTCACGAGGAGATCTTGTACCCCGCCTCCGCAATTAGGGTTCACCAGGAGTGGATCAACGGCCAATGGATTCGTTCCAATTGA 429 0.5944 MRPPRKKVNFRPGDKVEVCSNEEGFFGSYYLATVVSALDNGLYVVRYDTLLEDDESKPLTLTVFPRELRPKPPRIATSSSFARYQRVDAFDNDGWWVGEITGKVDLDRYYVYFSTTHEEILYPASAIRVHQEWINGQWIRSN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02939 142 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Vian1g02939 142 Pfam Agenet domain 13 73 IPR008395 -
Vian1g02939 142 SMART agenet_At_2 79 135 IPR014002 -
Vian1g02939 142 SMART agenet_At_2 8 76 IPR014002 -
Vian1g02939 142 Gene3D - 1 88 - -
Vian1g02939 142 CDD Tudor_Agenet_AtDUF_rpt2_4 85 129 - -
Vian1g02939 142 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02939 Vian-Chr1 48097396 48097824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02939 20 133 PHD Transcription Factor Family AT5G58610 31.343 2.34e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02939 - - vra:106753183 251.906