Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02917 ATGTGCAACATCCTTGACCCAATTATGGACAACTATCAAGGTGATTTGAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCATGGGAACTTCATCATCTAAAGCTTGTGCTCCTTTTTCTCTCGATCACTGGCAGTTCTCTTCCGTTTTGGAAGGGTTTGATGGTAACTTTGGTGATCCATTCTCAAACACGAGAGATCCCTTTCTACACCAGCTTGAATTGCCTGTTTGCTTTAACAGCACAAGTTCTGCAGAAATTAGCAGTTCTGGGGCATTGGAAGAAGCAACTTTTTTTGGTGGTGGGGTTGCTGCTAGTAGTAGTAGTAGTAGAAACAGTTGTGTTTTGAAAGAAACGATTTTTGAGGATGATGACACGAGAAGGCCTTGTAATAGCATATTGGCAAACATGATTCAGATCTCTCCCCCCAATGATAAGCTACCCATGTCGCCATTGGTGGAATCTTTGTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTTAGGTGATACCATGATTAATGTGAAGACTTCTGAAGATGATTGCTTGGTGGGTAACAACAACACAAAAGAAATGCAGATCTCACCTCCACGGAATCCATGTCTTAAGAGAAGGAAGAGTCTGGCAAAGAAATCTATTTGTGTGCCTGCACCAGCTGCACCGAATAGCAGACAGAGTGGCGAGGTAGTCCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGATCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCTGCAAGAAAACAAGTTGAGAGAAGCAGAACAGATCCAAACCTGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTAGCTGGTTCTTCTCGATCTCAACCTTCATCAAAAGGCAACAACTTTGGTGCTTCAAAGAATGAAGAAACCAGTCCCCAAAACAATGAAGAGCAGCACGAGGAGAGCAACAGTGATAGCAATAATGTGAATAACAGTGCTTGTGTTCAGGAAGATGGAGAATTCAGTGACATTGGACTCCCTTATAAGCCAATATCCAATATGAAGAGCTACCAACAACAAAAACAGCTTGATCAGGGTTTGTTTGCAGAGTTTGGAGAAATAGAAAAAGCTCACTCATTAAACCTAATGTCTCCACCACAAGGTTTTGATGATCACCAAATGAAATCCAACGCTTTAGATTCATTCCATATCTTTGACTGGAGCGCTGATAACAGCACCGAGTTCCACCTCATTTGA 1296 0.4298 MCNILDPIMDNYQGDLSDIIRASGASYGSCSMGTSSSKACAPFSLDHWQFSSVLEGFDGNFGDPFSNTRDPFLHQLELPVCFNSTSSAEISSSGALEEATFFGGGVAASSSSSRNSCVLKETIFEDDDTRRPCNSILANMIQISPPNDKLPMSPLVESLSRALKPSGVVLGDTMINVKTSEDDCLVGNNNTKEMQISPPRNPCLKRRKSLAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNLLVITYTSEHNHPWPTHRNALAGSSRSQPSSKGNNFGASKNEETSPQNNEEQHEESNSDSNNVNNSACVQEDGEFSDIGLPYKPISNMKSYQQQKQLDQGLFAEFGEIEKAHSLNLMSPPQGFDDHQMKSNALDSFHIFDWSADNSTEFHLI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02917 431 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02917 431 FunFam probable WRKY transcription factor 14 207 287 - -
Vian1g02917 431 SUPERFAMILY WRKY DNA-binding domain 231 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02917 431 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02917 431 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02917 431 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 390 IPR044810 GO:0003700
Vian1g02917 431 MobiDBLite consensus disorder prediction 286 346 - -
Vian1g02917 431 Gene3D WRKY domain 222 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02917 431 MobiDBLite consensus disorder prediction 286 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02917 Vian-Chr1 47647353 47650618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02917 1 409 WRKY Transcription Factor Family AT2G34830 40.308 7.68e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g02917 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02917 - - vra:106752855 792.341