Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02912 ATGTGTGCAACAGTGCTGCAAGACCTCAAAAACTTACATCAACCCCCAGGCTTTAACTCTACAATTCTCTCAAACTGTCTCAACAATCCCTCTCTTAGGTACTGCTCTTCGTCTCCAATGATGGACTTTGATGAAATATTCAAGTTTACCATTGTTGCAAGCCATCTCTGCAATGAATCCAAGAACCCCAATTGTGTAGAGTCATTCCCCAAAGTTGATCTTAGAAACCGCCCAAGTATTGCACCACTCTATTTGTCCTTCGATTTCTTTTGGAAATATTGCCCCTTGAGCATTATGTCCATTGATTTCTCCAACAATTCTATGAAGGGTGGTTTTCCAACCGAAGTTTTCTATTGCACCCAAATCCAGTCTCTTGATCTGAGTCTCAATGCATTTTCTGGGGACATCCCAATTCAAAGTTTCTCTTCCTTGACCAACCTCACTTCTCTCAACCTCTCCTATAATTGTTTTTCAGAGAGTAAACTGTCTGATTCCCAATTCTTCAAAAGATTCAATTCTTCTAGTTTTCTTCATTCTGGTGCTCTCTTGGATCCAAAAAAGTTTACTGCCAAGGCTGTTGTTCTGTTAGTTTTCCTTCCCATCCTCGTCATTTTTATGGTAATTTCCTTGGTATGGCTTTGTTTCCAAAGGCCTGATTTTCTCCCGAGTAAACTTCAAAGAGGTAGGACGTTTACACCAGCAATTCTAAAGGCAGCAACTGAAGGCTTTTCGGATAAGAATCTGGTGGGGATGAGTGATGTTGTTCACATCTACAAAGGGATGTTGAGAGATGGTACTGAAGTGAAAATTGAGATGTACTGGGATGATATACCAAGGGATAGTTACCGTAGATTTATTGAGGAATGCAAGATTCTGTCAAAGTTACACCACAAAAACCTTGTCAGAGTTCTGGGGTGGTGTAAGAGCAGAAAATTCAGGGCCCTTATAACAGAATGGACAAGAGAAGAAAATATTGAAATGTGGTTATCAGGGTCAGGTCCACCATGGAATCATAGAGTGAAAGTGTTAATGGGAATTGTACAATGCATGCGTTATATGCAGAAGGAATGGCCTGAAATTGACTATGAACTCGACACAAGTAGTATTTTGCTGTCTGACAATACGGAACCATTAATTTCAAGGTTCAAAGTTGGAGATCATAACAACAATGAAACAAAGATACATAAGTTTGGAGTATTTGTGCTTGAGCTGATACTACATAAGAAGTTTGATGGAGGTGATGCTGAATCTGTTAGGTACATGAGAACCCTTAATCCTGCAGATTTGGTGCAGATGATTGATGAGAGAATAGAAGTAACTGAAGCTAATTTTCATCAAGTTAAGCAGGCACTGTCTCTAGGATTAATGTGCGTGGATCAATCGAACAGTGAGAAGCCAAGCTTGAGCATGATACTTAACACTGTAGCAAGAGCCTACAAAACGTGCCTGTTCAAACCAATTAAGTAG 1467 0.3988 MCATVLQDLKNLHQPPGFNSTILSNCLNNPSLRYCSSSPMMDFDEIFKFTIVASHLCNESKNPNCVESFPKVDLRNRPSIAPLYLSFDFFWKYCPLSIMSIDFSNNSMKGGFPTEVFYCTQIQSLDLSLNAFSGDIPIQSFSSLTNLTSLNLSYNCFSESKLSDSQFFKRFNSSSFLHSGALLDPKKFTAKAVVLLVFLPILVIFMVISLVWLCFQRPDFLPSKLQRGRTFTPAILKAATEGFSDKNLVGMSDVVHIYKGMLRDGTEVKIEMYWDDIPRDSYRRFIEECKILSKLHHKNLVRVLGWCKSRKFRALITEWTREENIEMWLSGSGPPWNHRVKVLMGIVQCMRYMQKEWPEIDYELDTSSILLSDNTEPLISRFKVGDHNNNETKIHKFGVFVLELILHKKFDGGDAESVRYMRTLNPADLVQMIDERIEVTEANFHQVKQALSLGLMCVDQSNSEKPSLSMILNTVARAYKTCLFKPIK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02912 488 Pfam Protein tyrosine and serine/threonine kinase 254 382 IPR001245 GO:0004672|GO:0006468
Vian1g02912 488 SUPERFAMILY L domain-like 60 167 - -
Vian1g02912 488 SUPERFAMILY Protein kinase-like (PK-like) 222 475 IPR011009 -
Vian1g02912 488 Gene3D Phosphorylase Kinase; domain 1 219 319 - -
Vian1g02912 488 ProSiteProfiles Protein kinase domain profile. 243 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02912 488 Gene3D Ribonuclease Inhibitor 18 188 IPR032675 -
Vian1g02912 488 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 96 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02912 Vian-Chr1 47589841 47591400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02912 68 382 Receptor kinase-like Gene Family AT5G46330 27.559 3.06e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vian1g02912 PK_Tyr_Ser-Thr 2.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02912 - - gmx:100779045 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02912 1 47589841 47591400 Vian1g02912 1 47589841 47591400 ECH