Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02910 ATGGTGAAAATTTCAGTTGGTGGGTATGATGACGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGAAGGGAAGAGGAGGAGGAGGATCAAGAAGAAGAAGAACGAAGCACGCAACGAAGCTTTGAAATTGTTGACCGTTCAATTGAACTTCAAGAGCGTGAAGATCATCATCCTGCTCCACCCCAACGTGCTACCCCAAATGGGTCTGCAAGCAATGCCACCAGAGTTAGGTCCATTCCAATCTTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCTCCTGTCTTCCAGTGTGGAAGGATTGTTGCGGAGGCTCAGATATTTAGTTGGAACTCTTGGCGTTTTAGGGTTGTGGATAATATTCTTGAAATATTGAAATTTGTTGATCTTGGATTAAAGTGTGAGAATGGACACATAGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCCATGTGTTTGATGCCCATTGGGTATAACCGTTGTCGGGCTATTGAGAAGGTGTTGGACTCTATTAAAATGTCGTGTCCGAATGCAAATTATGGATGCACAGAAACGTTTTGTTACAGCAAGAAAAACGATCATGAGAAGGAATGCATCTATCTGCCATGTCTATGCCCACATAGTGGTTGTGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACGTCAGCCACAGACATGTAGACTCTGGAACACTGTTTACATATGATAAATTTTTCACAGTCATCTTCAATGCTGATCAGAAAACAATTGTTCTTCAAGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCATGAGCAGCTGGGACATAAAGTTCGCATTAGTTGCATCGGCCCCAAGTCCACGGGAGAGTTTCAGTATGAAGTTCTGGCTAGGTTTCGAGGAAGCAGTCTAATACTGCAATCTTTTACCAAGATCATTCAAGGTCAATATGCTGATCCTCCTTCAAACGCGTTCCTTTTGATTCCTTCTGGGTTTTTTGGCCCTCTACAACTGAAACTAGACATTCGCATTAAGTCACATTAA 1068 0.4307 MVKISVGGYDDGEGPSNRNQKRRREEEEEDQEEEERSTQRSFEIVDRSIELQEREDHHPAPPQRATPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCGRIVAEAQIFSWNSWRFRVVDNILEILKFVDLGLKCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHSGCDFVASSKELFLHVSHRHVDSGTLFTYDKFFTVIFNADQKTIVLQEKNDGNLFIVHNNHEQLGHKVRISCIGPKSTGEFQYEVLARFRGSSLILQSFTKIIQGQYADPPSNAFLLIPSGFFGPLQLKLDIRIKSH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02910 355 MobiDBLite consensus disorder prediction 35 61 - -
Vian1g02910 355 Coils Coil 17 37 - -
Vian1g02910 355 SUPERFAMILY TRAF domain-like 181 352 - -
Vian1g02910 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Vian1g02910 355 Pfam Seven in absentia protein family 171 285 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vian1g02910 355 MobiDBLite consensus disorder prediction 1 73 - -
Vian1g02910 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 30 354 IPR044286 -
Vian1g02910 355 ProSiteProfiles Zinc finger SIAH-type profile. 181 239 IPR013010 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02910 141 283 C3H Transcription Factor Family AT2G41980 32.215 5.52e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02910 K04506 - gmx:100778869 480.715