Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02900 ATGGTCACAAGATACCCAAATGAAAAGAATAACCCTTCAACTAGACATTTCATCCATGGATATCACCTAATACAAGGACAGATGAACCATGGAATGGAAGACTATATTTTCGCTCAACGTAGGAATCTCGATGGCTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCCAAATACTTACGAAACCATCTATTTGAAAATATACTGAGGCAGGCTATTAAGAAAGCATGCAAAGCAACGGATGATGAGATTTTAGAAAACATAGCTGATTCACGTGGAGGATCAACAGCAGTTGCAGCAATACTAGTCAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTCGAGCAATATCATGCAACAAAGGTCGAGCAAAGCCACTTACTCTGGATCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGGGGTTTTGTGTCTAAGAGACCCGTAGCTTACCCTGTCCTCCAAATGGACAAGCCTTCCCTCGCCCTAAACTTTCGGAATGTTCCAAGAGTGGATGGGCAATTAGCAATGACAAGGGCATTTGGAGATGGAAAACTAAAGGAGCACATTACGGCAGAACCAGATGTGACCATTCAGAAGATTGATGAAGACACTGAATTCATTATTTTGGCAAGTGATGGTCTGTGGAAGGTACATGAATATTGCATGCATCTTATAATTACAGATGAACACATATTGGCTGATGCAGAGCAAGCATAA 753 0.4143 MVTRYPNEKNNPSTRHFIHGYHLIQGQMNHGMEDYIFAQRRNLDGYDLGLYAIFDGHSGHEVAKYLRNHLFENILRQAIKKACKATDDEILENIADSRGGSTAVAAILVNGVKLLVANVGDSRAISCNKGRAKPLTLDHDPEKEKALVESRGGFVSKRPVAYPVLQMDKPSLALNFRNVPRVDGQLAMTRAFGDGKLKEHITAEPDVTIQKIDEDTEFIILASDGLWKVHEYCMHLIITDEHILADAEQA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02900 250 SUPERFAMILY PP2C-like 14 231 IPR036457 -
Vian1g02900 250 Gene3D - 12 249 IPR036457 -
Vian1g02900 250 ProSiteProfiles PPM-type phosphatase domain profile. 18 250 IPR001932 -
Vian1g02900 250 PANTHER PROTEIN PHOSPHATASE 16 229 IPR015655 GO:0004722|GO:0006470
Vian1g02900 250 CDD PP2Cc 17 229 IPR001932 -
Vian1g02900 250 Pfam Protein phosphatase 2C 30 231 IPR001932 -
Vian1g02900 250 SMART PP2C_4 8 245 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02900 Vian-Chr1 46136697 46138603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02900 15 235 PP2C-type Phosphatase Gene Family AT2G34740 57.143 1.18e-87 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02900 - - gmx:100814772 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02900 1 46136697 46138603 Vian1g02900 1 46136697 46138603 ECH