Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02894 ATGCTCCTAGAGCCTCACATCGCTTCACAAGAAACCTCAATTAAATTGGAAACTTTCTCTACAAATCTCTCTCCCCAAGAAGGCCGAGTGGATCAATTTGGGAAATCGGAGAACCAGTTGGAGAAGAAGCACTACACAGGAGTCTGCCAGCGGCCTTGGGGAAAGTTCGCCGCTGAGATCCGCGACTCGAACAAGCGCTGGTCGAGAGTGTGGCTTGGAACCTTCGACACTGCCATCGAGGCCGCCAAGGCCAACGACCGTGCTGCCTTCAGGCTCTGTGGCTCAAAGGCCATCCTCAACTTCCCGCTAGAAGTAGGCGCGATGGACGCCACCGTCAAGGCCGAAGGCGAAAGGAAGCGGCAACGCCAGGAGGAGGGGGTAGAGGAAGTAAAGCCAGTGGTGAAGAAGGAGAAAACAACAGAACAGGAGGTATGA 435 0.5471 MLLEPHIASQETSIKLETFSTNLSPQEGRVDQFGKSENQLEKKHYTGVCQRPWGKFAAEIRDSNKRWSRVWLGTFDTAIEAAKANDRAAFRLCGSKAILNFPLEVGAMDATVKAEGERKRQRQEEGVEEVKPVVKKEKTTEQEV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02894 144 SMART rav1_2 44 108 IPR001471 GO:0003700|GO:0006355
Vian1g02894 144 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vian1g02894 144 Gene3D AP2/ERF domain 43 105 IPR036955 GO:0003700|GO:0006355
Vian1g02894 144 PANTHER DNA-BINDING DOMAIN 34 121 IPR044808 GO:0003700|GO:0009873
Vian1g02894 144 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vian1g02894 144 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vian1g02894 144 MobiDBLite consensus disorder prediction 112 144 - -
Vian1g02894 144 SUPERFAMILY DNA-binding domain 44 104 IPR016177 GO:0003677
Vian1g02894 144 ProSiteProfiles AP2/ERF domain profile. 44 102 IPR001471 GO:0003700|GO:0006355
Vian1g02894 144 FunFam Ethylene-responsive transcription factor 2 43 104 - -
Vian1g02894 144 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02894 Vian-Chr1 46047493 46048402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02894 41 141 AP2-EREBP Transcription Factor Family AT5G47230 68.627 1.96e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g02894 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02894 K09286 - gmx:100800453 125.946