Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02892 ATGGAAAAGGAACCTCTGCTTCCATATTTCAGCCCCAGAAAGAAGCCCCTGGCATTGTCACCGCTATGTCCCTTGCCAGAGCACGAGGACATGGTTCTTCCAATGACCCCGATGGAATTCAAGGACCGCCTCATCTTTGGTCCTGCTTGTGCTACCCCAAGGGACCCTACACCTTTGGCCGATGCCTTAATACTTCCCCTCAATTCCCCAAAATGTTCCTCTTCTACGTCGCAGGACTGTGCATCGCCATCACGGTTTGATTCCCAGTCGCAACAACCATCCTCTTGGCTCCTTGACCCCAATTACTCCTGGCGGAAAACAAACCTTCATCGCTCCAAAACCGCGCCTGCCATGGCGGTGATCAGCGATTTCAACCCCCAATCCTCTGTGCCAAGGCCGCAATTTGGCAGCCAGAGTATTGTGCGCCAGGGTGTGATTCTTCTTGTTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTTCAGCTTCCGAGACTCATCCTGTAGTTGATGCATTGTATTTTTGTATAGTCACAATGTGCACAATAGGATATGGTGACATCACTCCGAATAGCACAGCCACTAAACTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGCTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCAGTGAAGGGGAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGATTGAAGGTGGCGCTGGCGTTGGGAGTTGTGGTGATTTGTATTGGGGTAGGTGTGGCGGTTATGCATTTTGTGGAGAAGCTTGGTTGGTTGGACTCTTTTTATCTTTCAGTTATGTCGGTTACTACGGTTGGGTATGGAGACCATGCTTTCAAGACCATGCATGGCAGGATCTTTGCTGCAATTTGGTTGCTCGTGTCTACTCTTGCCGTGGCTCGAGCGTTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCACAGGATGATGGCGAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCAGCAGACATAGACAACAATGGCTTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACGTCATGCAGGTAAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACCCTTGCTGATCTTATGGAGCCTCATAATTGA 1278 0.4671 MEKEPLLPYFSPRKKPLALSPLCPLPEHEDMVLPMTPMEFKDRLIFGPACATPRDPTPLADALILPLNSPKCSSSTSQDCASPSRFDSQSQQPSSWLLDPNYSWRKTNLHRSKTAPAMAVISDFNPQSSVPRPQFGSQSIVRQGVILLVLYLALGVVIYWFNRHNFSASETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVAVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDVMQVSEKFDRLDAGNCGKITLADLMEPHN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02892 425 FunFam Two-pore potassium channel 3 248 362 - -
Vian1g02892 425 FunFam Two-pore potassium channel 5 129 239 - -
Vian1g02892 425 Gene3D - 139 239 - -
Vian1g02892 425 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Vian1g02892 425 SUPERFAMILY EF-hand 362 421 IPR011992 -
Vian1g02892 425 MobiDBLite consensus disorder prediction 75 99 - -
Vian1g02892 425 Gene3D - 334 424 - -
Vian1g02892 425 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian1g02892 425 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian1g02892 425 Gene3D - 269 333 - -
Vian1g02892 425 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 145 399 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian1g02892 425 SUPERFAMILY Voltage-gated potassium channels 255 361 - -
Vian1g02892 425 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
Vian1g02892 425 Pfam Ion channel 271 340 IPR013099 -
Vian1g02892 425 Pfam Ion channel 146 226 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02892 Vian-Chr1 45996102 46008256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02892 4 422 Ion Channels AT4G18160 62.937 4.88e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02892 K05389 - gmx:100804249 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02892 1 45996102 46008256 Vian1g02892 1 45996102 46008256 ECH