Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02875 ATGGAAGGAAAACTGATCAAACAAAAACAAAAACGAGAGATTAAGAAGATTGAGAATAATAGGGATCTTCTCATTACTTTCACCAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGTTATCAACTCTTTGTGGAGCAAAAGTTGATATACTTATGCATACTTCATCTGGAAACTGGTTTAGTTACGGAGAACCTTCTCACCAAGCAATGATAGTTTCTACTGATAAACAAAACCTTTCAAAAGATGTCATTAATCTTGTGGAAGATCAAACAAAATTAGAGATAGATGAACTTTGTGCAAAAAATAAGAGACTTATAGATCAAATGCACTATGAGGAAGAGCGGGAGAAAGAACTTACAGAGATTATGAAGACAAGAAATGCCCATGGTTGGTGGGAGGCCAAAGATCTTAATCATGAACAAGCTAAAGAAATGAGGGCATCTTTGATGGAACTCAAACAAAAATTGGAAAATGAACTTTCTATCAAGTGTGGGGAGAAACATAAGTCTTCTCATGCTCCTCCAAATCAAGTGAATGGATTCAATTTTTGTCCTAATTACACAAGAGGAAGTAGCATATCTGAAGTTGTCTTTGGTGCCAATAATGAAGCTTATGGAATTGTTGCAACTGAAAGTATTCTTCCTGATATTTCTTTTAGTCCCATGGACGAAGGGAAAGACTTCAAATTTTTTCCATATGGTGAACGTAGGGAAGATTTGTTTGATATTGTTTATCCTCACAAATATCTCTATCATGGATATAGTTTTTTTGTTGATGATAGTGCTTCTACTTTTGCTTCTTTTCCTGCAAAACAAGTTCAAGGACTTAACCCTAATGATGGAAATGGAAGTACTGGTAGTACTCATATCTTTTCTTCATCTTCAAATCAATCCCAAGGAAATAACTCATTTGTACCTAATGCAAATAATGAGACTATCAAAATAAGAGGTAATGAGAATGGTGGTGGAAATGATAGTTGTGCTCTCCTCTCCTCCTCCCATTTGAATCAGCAACAGGAGACTAACCTGTTTATGGACATTGAAAATGAGCTAAGAGATGATTTTTCTTTCCCTCCATTTCCATGGTCTTAA 1095 0.3534 MEGKLIKQKQKREIKKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSYGEPSHQAMIVSTDKQNLSKDVINLVEDQTKLEIDELCAKNKRLIDQMHYEEEREKELTEIMKTRNAHGWWEAKDLNHEQAKEMRASLMELKQKLENELSIKCGEKHKSSHAPPNQVNGFNFCPNYTRGSSISEVVFGANNEAYGIVATESILPDISFSPMDEGKDFKFFPYGERREDLFDIVYPHKYLYHGYSFFVDDSASTFASFPAKQVQGLNPNDGNGSTGSTHIFSSSSNQSQGNNSFVPNANNETIKIRGNENGGGNDSCALLSSSHLNQQQETNLFMDIENELRDDFSFPPFPWS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02875 364 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Vian1g02875 364 Coils Coil 140 163 - -
Vian1g02875 364 SUPERFAMILY SRF-like 9 72 IPR036879 GO:0003677|GO:0046983
Vian1g02875 364 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Vian1g02875 364 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Vian1g02875 364 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Vian1g02875 364 MobiDBLite consensus disorder prediction 277 309 - -
Vian1g02875 364 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Vian1g02875 364 PANTHER MADS BOX PROTEIN 9 160 - -
Vian1g02875 364 Gene3D - 19 88 IPR036879 GO:0003677|GO:0046983
Vian1g02875 364 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02875 Vian-Chr1 45515383 45516656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02875 1 169 Type I MADS-box Gene Family AT1G28450 33.516 3.35e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g02875 SRF-TF 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02875 - K12412 ccaj:109813207 337.806