Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02871 ATGGACGAAATCAAAGCCCTAATCAACCACAAGCGACACCGCCTCATCATCAACATCTCCGATCTCCACAACTTCCACGACTTGGGTAACAGGATAATCAGGACTCCAAGTGAGTACATTCAACCGCTCTGCGATGCGGTGACGGACGCTACTCGTGCTATTGATCCTAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTGGGATTTGAAGGTCCCTTTGTTTCTCGCCGAGTCACGCCAAGGGAGCTTCTTTCTGAATTCATAGGTTCTATGGTTTGTGTTGAGGGCATTGTCACCAAATGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACTTCTCGCGAATATCGTGATATTACCTCTAATTTGGGTTTACCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGCAACTTACTTGTGACTGAGTATGGATTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGTAGAAGATGACCTTGTTGATTCCTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGAGTATATAAGGCTCTTGCAGGGAAAAGTAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGCCCCGAAGATCTCAAAAACATTAAAAAGATAGCTGAAAGAGATGATGCATTTGACCTGCTAAGTAATTCGCTTGCACCTTCTATATATGGGCATTCTTGGATAAAAAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTTGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGTGACCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCAGGGGTTCTTCTGGGGTTGGTTTGACAGCCGCTGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCCGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATGAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCTAAAGCTGGTATCCATGCATCACTAAATGCCCGATGCAGTGTGGTTGCCGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACTAAAAATATTGGACTTCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATTGTGTTAGATCAAATGGATCCTGACATTGATCGTCGAATTTCTGAGCATGTACTTCGTATGCATAGATTTCGTTCTGCTGTTGATGGAGGCGAGGCAACACTTAATGGGAGCTCAGGATATGGAAGAGAAGATGAAGCTGATACGGACTCGTCGATCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGAGAGAGGTCGCAAACGTGATACTCTTACAATTAAGTTTCTTAAGAAATATATCCACTACGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCGTCTGAGAACATTGTCACAGCCTATGCTGAGCTCAGAAATGCAAGCTCAAATGCAAAGACAGGAGGAACACTTCCCATAACTGCCAGAACCTTAGAAACCATCATACGTCTCTCAACAGCTCATGCCAAACTAAAATTGAGCAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTAAAGGTTTTAAATTTTGCAATATATCACAAAGAACTTACAGAAATGGAGGAGCGAGAGCAAGAGAGGGAGAAAGAGCAAGACAGGAAGCGCAAGGCTGATCATAATGAAAATGATGGTCCTGATCGTGGTTCTAAAGATAGAAGAAGATCAACATTAGGAACAGATCCCATTGAAGTAGATGAAACCCCAGCAGCTGAAGCTAATGTTGGACTCACCCCTGCAAGAATTGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGAGCCAACCGCCTGGATCTCATAGCTATTGCAGACTTAGAGAATGTTATCAACAGAGGGGCAGATTCACCTTACACCGCTGCAGATATACTATTCCTATTAGAGAGGTTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTGCATATGATATCATAA 2247 0.4277 MDEIKALINHKRHRLIINISDLHNFHDLGNRIIRTPSEYIQPLCDAVTDATRAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGVYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDAFDLLSNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDEDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEATLNGSSGYGREDEADTDSSIFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASENIVTAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKEQDRKRKADHNENDGPDRGSKDRRRSTLGTDPIEVDETPAAEANVGLTPARIEAFNSLFGQHMRANRLDLIAIADLENVINRGADSPYTAADILFLLERLQDDNRVMIVDGMVHMIS 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02871 748 Gene3D - 243 636 IPR027417 -
Vian1g02871 748 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 639 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 Pfam MCM P-loop domain 249 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 Coils Coil 615 644 - -
Vian1g02871 748 SUPERFAMILY Nucleic acid-binding proteins 2 231 IPR012340 -
Vian1g02871 748 Gene3D - 1 71 - -
Vian1g02871 748 MobiDBLite consensus disorder prediction 622 662 - -
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 602 617 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 153 167 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 463 473 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 430 440 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 179 191 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vian1g02871 748 Gene3D - 107 161 - -
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein family signature 414 426 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein family signature 362 376 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein family signature 302 317 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 403 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 PRINTS Mini-chromosome maintenance (MCM) protein family signature 441 449 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 Pfam MCM N-terminal domain 1 55 IPR027925 -
Vian1g02871 748 Pfam MCM OB domain 81 210 IPR033762 -
Vian1g02871 748 ProSitePatterns MCM family signature. 370 378 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vian1g02871 748 MobiDBLite consensus disorder prediction 622 673 - -
Vian1g02871 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 627 IPR027417 -
Vian1g02871 748 CDD MCM3 264 613 - -
Vian1g02871 748 SMART mcm 76 615 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 Pfam MCM AAA-lid domain 528 611 IPR041562 -
Vian1g02871 748 Gene3D - 81 211 IPR012340 -
Vian1g02871 748 ProSiteProfiles MCM family domain profile. 261 467 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian1g02871 748 FunFam DNA helicase 107 161 - -
Vian1g02871 748 SMART AAA_5 303 456 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02871 Vian-Chr1 45425648 45430109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02871 1 550 Core DNA Replication Machinery Family AT5G46280 83.152 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02871 K02541 - gmx:100811545 1323.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02871 1 45425648 45430109 Vian1g02871 1 45425648 45430109 ECH