Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02860 ATGATGGCCGACGATCCCATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTTTATTATGATGCTAAGTTTGGTAGGAAGAAGGCTGAGAAGAATGGCAAGACTGCTGATGAAGCGGTGGTAAGTAATGGAGGTTCATTGGGCATTGTGTCCAATGGCAATCCACATGCAAAAAAGGCATCGGAAATGGCTGTCTATGAGCAGTTTCGAACTGAGGGGCAGAACCAGATACACTCAAATGGATTTTCGCCGGTTAATATGGATGAAAGGCCGCATAAGTCTTTGCTTCCACCTTTTGAGTCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTATCGTGGGAAAGTATCAAGGGCTTAGAGAATGCCAAACGTTTGCTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTCTTTGGACCACCAGGAACAGGAAAGACAATGCTTGCTAAGGCAGTTGCGACAGAGTGCAAGACTACCTTTTTTAATATTTCAGCATCATCTGTAGTTAGCAAATGGCGAGGTGATTCGGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAACGTGGGGAATCTCGTAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTTGTTCAGATGGATGGTTTGACCCGGACAGATGAACTGGTTTTTGTCTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTACGACGTCTTGAGAAGCGTATCCTTGTACCACTTCCAGAACCAGTAGCGAGGAGAGCAATGTTTGAGGAACTCCTTCCTGTGCAGCCTGACGAGGAACCGATCCCCTATGATTTGCTTGTGGATCAGACAGAAGGATTTTCAGGGTCAGATATCCGATTACTCTGTAAAGAAACAGCAATGCAGCCCTTGAGACGCTTGATGTCACAACTTGAGCAGAGACAGGAGGAGGTGGTTCCTGAAGATGAGTTGCCAAAAATTGGGCCAATCAGATCTGAAGATATAGAAACGGCATTAAGAAACACAAGACCATCAGCTCATCTCCATGCCCACAAATACGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1221 0.4505 MMADDPMPTRWSFQDFKFYYDAKFGRKKAEKNGKTADEAVVSNGGSLGIVSNGNPHAKKASEMAVYEQFRTEGQNQIHSNGFSPVNMDERPHKSLLPPFESAEMRTLAESLSRDIIRGSPDVSWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGESRSEHEASRRLKTELLVQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPVQPDEEPIPYDLLVDQTEGFSGSDIRLLCKETAMQPLRRLMSQLEQRQEEVVPEDELPKIGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02860 406 SMART AAA_5 157 294 IPR003593 GO:0016887
Vian1g02860 406 FunFam Katanin p60 ATPase-containing subunit A-like 2 293 382 - -
Vian1g02860 406 Pfam AAA+ lid domain 319 355 IPR041569 -
Vian1g02860 406 Gene3D - 293 382 - -
Vian1g02860 406 Gene3D - 120 396 IPR027417 -
Vian1g02860 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 387 IPR027417 -
Vian1g02860 406 CDD RecA-like_VPS4-like 127 290 - -
Vian1g02860 406 FunFam Katanin p60 ATPase-containing subunit A-like 2 120 304 - -
Vian1g02860 406 Pfam ATPase family associated with various cellular activities (AAA) 161 291 IPR003959 GO:0005524|GO:0016887
Vian1g02860 406 PANTHER AAA DOMAIN-CONTAINING 60 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02860 Vian-Chr1 45095982 45135371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02860 155 350 Calmodulin-binding Proteins AT3G56690 37.186 1.76e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02860 K07767 - gmx:100794098 722.62