Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02842 ATGGTGAAGTTCCTGAGGCCAAACAAGGCAGTGATCGTCCTGCAGGGCCGTTATGCGGGGCGGAAGGCTGTGATCGTTAGGTCCTTCGACGACGGAACCAGGGAGCGCCCCTATGGCCACTGTCTGGTTGCCGGAATCAAGAAGTACCCTAGCAAGGTCATCAAGAAGGACTCCGCCAAGAAGACGGCGAAGAAATCAAGGGTGAAGGCCTTTGTGAAGCTGGTGAACTATCAGCATCTCATGCCCACGCGCTACACGCTCGACGTAGATCTCAAGGACGCCGTCAACCCCGACGTCCTCTCCTCCAAAGACAAAAAGGTCACCGCTCTCAAGGAGACCAAGAAGCGCTTCGAGGAAAGGTTCAAGACCGGCAAGAACAGATCTTATGAGATAAATTCGGGAATAAAGATGAATCGTGTAGTTTGGCTCTATTGGGGCATCGTGGTCACAAGTTCCCCACTCTTTGGCCAAATGGCCAACTCAGAACAAAGCATGGTTAATGTTCCATTCTATGTACGTGTCTTGCAAAATAAAATGATCAAGTGCAACCCCCAAAAATTGTATGCATATAAGAAAGAAACCTCTCTCGACGACACTGGCATGCACCATCGCGGTAGTAAACGCATGACATTTGAAAAAAAACGCATTTCTGTGGGACGTACCACCAAACACACACTACTGGTAGTCAATTTGAAAGTAGAGTCTGAAGCAACGAAACAGTACACCCTAACGCGGTGCTGTGCTTGTGGTGAAACGTGCCTACTTTGTTTATGGAAGCGTGAGGGGAGATGA 792 0.4924 MVKFLRPNKAVIVLQGRYAGRKAVIVRSFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVNPDVLSSKDKKVTALKETKKRFEERFKTGKNRSYEINSGIKMNRVVWLYWGIVVTSSPLFGQMANSEQSMVNVPFYVRVLQNKMIKCNPQKLYAYKKETSLDDTGMHHRGSKRMTFEKKRISVGRTTKHTLLVVNLKVESEATKQYTLTRCCACGETCLLCLWKREGR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02842 263 Pfam Ribosomal L27e protein family 52 127 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vian1g02842 263 PANTHER 60S RIBOSOMAL PROTEIN L27 1 128 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vian1g02842 263 Gene3D - 1 144 IPR038655 -
Vian1g02842 263 Coils Coil 100 120 - -
Vian1g02842 263 SUPERFAMILY Translation proteins SH3-like domain 3 110 IPR008991 -
Vian1g02842 263 CDD KOW_RPL27 6 88 IPR041991 -
Vian1g02842 263 FunFam 60S ribosomal protein L27 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02842 Vian-Chr1 44601084 44602623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02842 1 129 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 79.845 3.73e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02842 K02901 - gmx:100799485 225.328