Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02836 ATGGAGATGAGTATGTTGGCTCCTTCCTTCCCTGGCTTCGCTAAACCCTCTGCAACTGTAAAACCTTCTCTTCTTACGCTCAGGGCATCTTCTCTGCGCCATGACTACCCTCTTGCGAGCAAAATTGTTGTTAAGACAGATTTACCCTATTCTACTGGTGAGATTACTTTGCAAAAGGAATTTTCTAATTTTGGAAAGATAGCTGAAGTTAAAATGGTTAAAGATATGAAAACGAAAAGATCCAAGGGTATTGCTTTCATTCAATATACATGCCAAGATGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGATTTTTATGGTCGAACAATCTATGTGGAAATTGCTAGATTGGGTTGGGATTGTTTTGGTGCAACCCCAAGGGCCTCAGGACCCCCAAAGAAGTGGAATTTGCCAGAGCAAGAAGTGGTAGATTGTTGGTACTGA 450 0.4178 MEMSMLAPSFPGFAKPSATVKPSLLTLRASSLRHDYPLASKIVVKTDLPYSTGEITLQKEFSNFGKIAEVKMVKDMKTKRSKGIAFIQYTCQDDAMLALETMDQKDFYGRTIYVEIARLGWDCFGATPRASGPPKKWNLPEQEVVDCWY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02836 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Vian1g02836 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 112 IPR000504 GO:0003723
Vian1g02836 149 SUPERFAMILY RNA-binding domain, RBD 46 118 IPR035979 GO:0003676
Vian1g02836 149 Gene3D - 30 140 IPR012677 -
Vian1g02836 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 122 - -
Vian1g02836 149 SMART rrm1_1 41 115 IPR000504 GO:0003723
Vian1g02836 149 FunFam glycine-rich RNA-binding protein 4, mitochondrial 28 144 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02836 40 122 Eukaryotic Initiation Factors Gene Family AT2G36660 34.940 1.17e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02836 - - pvu:PHAVU_002G189500g 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02836 1 44430896 44435413 Vian1g02836 1 44430896 44435413 ECH