Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g02829 | ATGGCATTGAACTCCATGGCTGCTTCTCATTCCCATTTCCCAAGTGACTCAGGCCAGCATCGACCTCCTACTCGTCAATCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATCAGATTGGACATGGGGAAAATGGAAAGCTTTTTGTGGCTTGCCATGTGTGTAGTTTTCCCGTTTGTCAACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAGTGCAACACCCGCTATAAGCGCCACGAAGGTTGTCCTAGAGTAGCTGGTGATGATGAGGAGCATTCTGATGCAGATGATTTTCATGATCCAGATGAGAAACATGATGCCAATCATTGGGAAAATAAAGACCACAAGGAACAGCAGTGGCATCCGAAAGGTCAAGCTTTATCTTCAGCAGGAAGTGTGGCTAGTAAGGAATTTGAAGGGGAGAAGGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGCAATGGAAAGCCAGGCAAAAAAAGAGAGGTATTCTTAACAAAGATGAAGCCAAAGATGACCAGGGAGAAGATGATTACCTTTTGGCTGAAGCTAGGCAACCATTGTGGCGTAAGGTTCCAATATCTTCAAGTCTAATCAACCCATATCGCATAATCATAATCATGAGGCTCTTTATCCTCGTTTTCTTCCTCCGTTTCCGTGTCTTAACTCCAGCATATGATGCATATCCACTGTGGCTTGCCTCTGTGATGTGTGAAGTATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATAACTCGTGAAACTTACTTGGATCGCTTGTCCATGAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAAGAGCCTCCCATTATAACAACAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGACAAGGTGTGTTGCTATGTATCTGATGATGGTGCGTCTATGCTCCTTTTTGATGCACTTTCAGAAACTTCTGAGTTTGCACGAAGATGGGTTCCTTTTTGTAAGAAGTATAGCATAGAGCCAAGGGCACCGGAGTTCTATTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTGCAGCCTACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTAAAAATTAACTCCTTAGTGGCAAAAGCTCAGAAGAAGCCGGAGGACGGGTGGGTGATGCAGGATGGAACCCCTTGGCCTGGCAACAATACTCGTGATCATCCAGGAATGATTCAGATTGGAAAAGCTGGTTCTCTGGTGATGTGGTTCATGAACTTACCATTGCAGGTGTATTTAGGAAGTGGTGGTGCACTGGACGTAGAAGGCAAGGAACTGCCACGGCTGGTGTATATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCAGCTGTGCTTTCAAATGCACCTTTCATGCTGAATCTGGATTGTGACCATTACATAAACAATAGCAAGGCTATAAGAGAGGCCATGTGCTTTTTAATGGACCCCCAGATAGGAAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGTCATGATAGATATGCTAATCGCAATATTGTATTCTTTGATGCACTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACCTGTGACTGCTGGCCTTCATGGTGTTGTTGTTGTGGTTGTTCGAGGAAATCCAAGTTAAAGAAGAAATCTGGTGGAAGAGGGGGTCTCTTTAGTAGATTATACACCAGGAAGAAGAAAATGATGGGGAAGAACTACGTTAGGAAAGGGTCTGAGTACATGTTTGATCTTGATCTTGAAGAGATTGAAGAAGGGCGTGAAGGGTATGGCGAGCTAGAGAAATCATCCCTCATGTCCCAAAAAAAGTTTGAGAAGAGATTTGGGCAGTCACCAGTTTTCATTGAGTCCACTTTGATGGAAAATGGTGGACTTCCTGAAGGCACCAACAGTCAATCGCTAATTAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAAAAGACTGAATGGGGAAAAGAGATTGGATGGATATATGGCTCAGTCACAGAAGATATATTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAAAGAGACGCTTTCAAAGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCCCTTGGTTCTGTTGAAATTTTCCTTAGTCGCCATTGTCCATTGTGGTATGGCTATGGAGGAAAACTGAAATGGCTGGAGCGGTTGGCTTATACTAATACCATTGTTTATCCATTCACTTCCATCCCTCTACTTGCATACTGCACAATTCCAGCAGTTTGTCTTCTCACTGGAAAATTCATCATCCCAACTTTGACGAACCTTGCTAGCGTATGGTTCATGGCTCTATTCATCTCCATCATTTTAACTGGTGTGCTAGAGCTGAGGTGGAGTGGTGTGAGCCTTGAAGACTGGTGGCGCAATGAACAATTTTGGGTGATTGGAGGTGTATCTGCTCACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTGGACACCAATTTCACAGTGACAGCCAAAGCAGCAGATGATAGTGAATTTGGAGAGTTGTACCTGTTCAAGTGGACAACACTTCTGATCCCACCAACCAGTCTTATAATCTTGAACATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGGTATGGTTCATGGGGTCCTTTGTTTGGGAAGGTATTCTTTGCTTTCTGGGTTATTGTCCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAGGCAAAACAGAACTCCTACTATTGTTGTCCTTTGGTCAATTCTTTTGGCATCAATTTTCTCTTTGATTTGGGTTAGAATTGATCCTTTCTTGCCAAAACAAACTGGCCCAGTTCTCAAACAATTAACAGACATTACATGTTTCACTTTCAGCAAGGAGAAAAAGCTGTCAGAATTCAGGGCCAAACTTGAACGAAAGATTCAAGATTTAGCTGCAAGTCCTTTGGCATCACCACCCGCTTCATCAGAAACAAAGAGGAGAGGGAGAGTGTTGTACGTGAGTGAGTATGGTGCGGATCCAAGTGGAAATGAAGAGAGTGGTGATGCCATTTTGAAAGCAGTGGAAGATGCTTCTAGTTTGCAGAAGGGTTATGAGATGGTTGCAGGGGTGAATGACCTTGGAGGAGTTGTCATTGATTTGGAAGGTGGAAACTACAAAATCAGCAAACCCATCACATTCCCTTCAGGTGTTGGCAATATTGTGGTAAGAGAAGGAACGTTGAGAGCATCTGATAAATTTCCTGGTGATAGACATCTAGTTGAGTTATGGTCATCAAAGACTGGGAAAGAAGGCAATGGTGGAATTTACTATGAAGACATAACTTTCAGGGACATTCTCTTTGATTCAAGCTACAGAGGAGGAGGGATATTGATCATTGATTCTGCTAGAATCCGGATCAACAATTGCTTCTTCCTTCACTTCACCACAGAAGGAATTCTGGTCCACCAAGGACACGAGACCTTCATCACAGATTGCTTTCTTGGACAACACTCAACCGTCGGAGGAGACAAAGATGAAAAGCACTTCTCAGGGGTGGCCATCGATCTTGCTAGCAATGATAATGCAATCACAGATGTTGTAGTTTTCTCAGCAGCCATTGGTGTTGTTCTACGGGGTCAAGCTAACATTTTAACTGGGGTGCATTGCTATAACAAGGCAACAGGTTTTGGTGGCATAGGGATATTAGTGAAATTGCCTGGTAATTCTCTGACAAGAATTGACAACTGTTATATGGATTACACTGGAATAGTGATGGAAGATCCAGTTCAAGTTCATGTCACAAATGGGTTGTTTCTAGGGGATGCTAATATTGTATTGAAGTCTGTTAAAGGTCAAGTTTTGGGTCTAAATATAGTGAATAACATGTTCAATGGTGACCCCAAAAGAAAGGTTCCTATTGTAAGTCTAGACGGGGAATTCAGTAGCATTGATCAAGCGCTGGTTGATCACAACCTTGTCAATGGGATGGGCTTGAGATCAACGGTTGGGAAGTTAACTGTCAATGGAAATGGCACAAAGTGGGTGGCTGATTTTTCATCGGTTTTGGTGTTTCCTAAGAAAATTAGCAATTTTCAATTTTCATTTTACGCTCAAGATGAGCCTAAGTTTGTAGCATTTTCTGTGACCAATGTGTCAGATAACGTTGTTGTTGTGGAGAGTGAGAAAGAAGCGAAAGGGTCTGTTTCCTTCACAGTTGAACAATAA | 4428 | 0.4286 | MALNSMAASHSHFPSDSGQHRPPTRQSASKVCRVCSDQIGHGENGKLFVACHVCSFPVCQPCYEYERSEGNQCCPQCNTRYKRHEGCPRVAGDDEEHSDADDFHDPDEKHDANHWENKDHKEQQWHPKGQALSSAGSVASKEFEGEKEFFSNGEWEERLEQWKARQKKRGILNKDEAKDDQGEDDYLLAEARQPLWRKVPISSSLINPYRIIIIMRLFILVFFLRFRVLTPAYDAYPLWLASVMCEVWFALSWILDQFPKWFPITRETYLDRLSMRFEREGEPNLLAPVDVYVSTVDPLKEPPIITTNTVLSILAVDYPVDKVCCYVSDDGASMLLFDALSETSEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEDGWVMQDGTPWPGNNTRDHPGMIQIGKAGSLVMWFMNLPLQVYLGSGGALDVEGKELPRLVYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQIGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDALYGYDPPVSEKRPKMTCDCWPSWCCCCGCSRKSKLKKKSGGRGGLFSRLYTRKKKMMGKNYVRKGSEYMFDLDLEEIEEGREGYGELEKSSLMSQKKFEKRFGQSPVFIESTLMENGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRDAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSLEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDSEFGELYLFKWTTLLIPPTSLIILNMVGVVAGVSDAINNGYGSWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQLTDITCFTFSKEKKLSEFRAKLERKIQDLAASPLASPPASSETKRRGRVLYVSEYGADPSGNEESGDAILKAVEDASSLQKGYEMVAGVNDLGGVVIDLEGGNYKISKPITFPSGVGNIVVREGTLRASDKFPGDRHLVELWSSKTGKEGNGGIYYEDITFRDILFDSSYRGGGILIIDSARIRINNCFFLHFTTEGILVHQGHETFITDCFLGQHSTVGGDKDEKHFSGVAIDLASNDNAITDVVVFSAAIGVVLRGQANILTGVHCYNKATGFGGIGILVKLPGNSLTRIDNCYMDYTGIVMEDPVQVHVTNGLFLGDANIVLKSVKGQVLGLNIVNNMFNGDPKRKVPIVSLDGEFSSIDQALVDHNLVNGMGLRSTVGKLTVNGNGTKWVADFSSVLVFPKKISNFQFSFYAQDEPKFVAFSVTNVSDNVVVVESEKEAKGSVSFTVEQ | 1475 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g02829 | 1475 | Coils | Coil | 1474 | 1475 | - | - | |
| Vian1g02829 | 1475 | FunFam | Polygalacturonase QRT3 | 1074 | 1470 | - | - | |
| Vian1g02829 | 1475 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 303 | 830 | IPR029044 | - | |
| Vian1g02829 | 1475 | FunFam | Cellulose synthase | 15 | 106 | - | - | |
| Vian1g02829 | 1475 | Coils | Coil | 387 | 407 | - | - | |
| Vian1g02829 | 1475 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 192 | 994 | - | - | |
| Vian1g02829 | 1475 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 105 | IPR013083 | - | |
| Vian1g02829 | 1475 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 463 | 609 | IPR029044 | - | |
| Vian1g02829 | 1475 | Pfam | Zinc-binding RING-finger | 23 | 97 | IPR027934 | - | |
| Vian1g02829 | 1475 | CDD | mRING-HC-C4C4_CesA | 30 | 80 | - | - |
Showing 1 to 10 of 18 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g02829 | K10999 | - | gmx:100780354 | 1842.01 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian1g02829 | 1 | 44323157 | 44333951 | Vian1g02829 | 1 | 44323157 | 44333951 | ECH |
Showing 1 to 1 of 1 entries