Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02821 ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACCGGTTGCTTTGATCCCAACACAATGGAAGAAAGTATACCCTCTCTAAAGGATAATTTCCCTCAAACTCTAGCAGACCCTCTAACTCCATCATCACATATGGTTGTAGATAACACCACAAACACTGATAATGGCCTTGAGGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTTTAACCATCACAATCTGCAACACCAAGATATCTCCACCTATGCAAGTGGAGTCACTCCCACATCTGCTAGTGACATCCCTCATTCTCAACAACATCTAGGTTTGAACATGGGAAACTCCTACATCAACAACACCAGCAACATGGATAACCATTTGGTGCAACAGGTCATTGATGTTCTTCCCTATCAGCAGTCCACTTGGGACCCTACTACTGTTCAGGAATTGCCAGACATAGCCTATGCTAATCAAATAGAACAGCAACAAAATGAACAACAATTTCAGCAAATGGAGACTCAAAACTGCAGCCAAAGCTTCAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCCCATCTTTGCACACCAATCCCACCATTTACCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTGGCCTTTCTTGGAGACCTTCCAATAGGGTCAGACAACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCACCTTAACCTTCCTCCACAGCCTCCAGCCCTTAGAGAGCTGTTTCAGTCTCTACCCCGTGGCTACAGCATGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATTGAGGGAGACGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACTCCCACTGTTGCCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGGGAGCAACTCAATGGAAAATACAAAATCTTAAGAAATCTTATACCAAACCCCACCAAGATTGATAGAGCCTCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTTATTAGAACAGTGAATGAACTCAAACTATTGGTAGAGAAGAAAAGATATGGGAGAGAGAGGTGCAAAAGGCCTAAAACAGAAGAAGATGGTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATAGACGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTTTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGGTTCCTCAGTCTATGCAAGTGCCATAG 1470 0.4469 MSTGDRPKMHEQTGCFDPNTMEESIPSLKDNFPQTLADPLTPSSHMVVDNTTNTDNGLEENLRLSVEELSFNHHNLQHQDISTYASGVTPTSASDIPHSQQHLGLNMGNSYINNTSNMDNHLVQQVIDVLPYQQSTWDPTTVQELPDIAYANQIEQQQNEQQFQQMETQNCSQSFNPSSILDPPYPSPDLLNLLHLPRCSAPSLHTNPTIYLTNPTQNTPNFQNPLAFLGDLPIGSDNNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSMPTNSRNGSLFGGDEIEGDGSQLDMGVLEFNRVTPTVAKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDGAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKVPQSMQVP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02821 489 PANTHER TRANSCRIPTION FACTOR BHLH91 8 484 IPR045895 GO:0006355|GO:0048658
Vian1g02821 489 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g02821 489 Pfam Helix-loop-helix DNA-binding domain 320 366 IPR011598 GO:0046983
Vian1g02821 489 Gene3D - 315 388 IPR036638 GO:0046983
Vian1g02821 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 384 IPR036638 GO:0046983
Vian1g02821 489 CDD bHLH_AtMYC1_like 322 386 IPR045896 -
Vian1g02821 489 SMART finulus 323 372 IPR011598 GO:0046983
Vian1g02821 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02821 Vian-Chr1 44182750 44184734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02821 14 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 37.030 2.27e-76 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02821 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02821 - - gmx:100782512 776.933