Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02819 ATGGCAAACAACGGGATCAATCCAGAACTCCTTCCGGCTGTTCCTTCTACTTCTTCTTCTTCTCCACTTGATACCTTACGACCAACTTTGCTAAATCAAACGGTTGGAACTTCACGAAATCAACCCATTCTTAATCATGAAGAGTATATTCCTTCCCCTTCTCAACATAATATTCCAGCAGTTAATCAAGATATTTTTAATCATGGTCATAATCAAGAAATTCCTGATCTTGCACTTGATCAACATGTTTCTTCTCTTACTCTTACTGTTACTTCTCCTGCCACTGTTGATCCCTTTCGCAGTCAAGATGACCCTCTTTTGATTTCTTGTCTTGAATATAATATTCCAGCTTTGGTTACTGCTCTTGATCAAAATATTCTCTCACTGGCTTCTACTAGTAATCAAAATAATATTAACCTTCATGTTGTCGAGAAACAAAGCCAAGGACTTAATCCATGTCTAAACGTTCCTTCTGTTACTCCTACCCTTGATCAAGATAATCCACATCCTGGTCAAGACATTTCGTCCATTCTTCAGGATCACACGCCATCTCTTGATCTTGATCTGGATGCGATACTTCACATTTTGAACAGCGATGTGGTATCCCAACCGAAGACCAGCGAAAATAAAGATACGGAAAATGCACGAATGTTGAAGATTGCGAATAATGCAATGGAAGAGTTGATGAAACTCTTAAGTATGAACGAACCCTTCTGGTTCAGGTCTCTTGTGGATGAGAGATTCGTTCTTCAGCGTGATTGCTACCAAAGGATTTTTCAAAGGAGTAATAGCTTAAACGGACCTCATGCTCGAGTAGAATCTTCCAAAGATTCACGAGTGGTGAAAATGAGTGGGACAGAGCTTGTGGAAATGTTTTTAAATTCGGACAAATGGGCTGATCTATTCCCAACAATTGTTAAAAAAGCTGAAACAATTGAAGTACTCGAAAGTGGTTCGTTAGGAAATAGAAATGGAGCTTTGCAGTTGATGAACGCAGAAATGCACATTCTTTCACCTTTGGTTCCAACTCGGGAATTCAGCTTCCTTCGTTATTGTAAACAAATCGAAGCAGGTGTATGGACCATAGGGGATGTGTCAATTGATTCTTCGACACACGAAATCTCTAATGTTTCCAGCTCTCGGAGGCTTCCATCTGGATTGCTGATTCAAGAAATTGCTGATGGATTATGCAGGGTTAGTAAGTCACCTGACTCAAGGAGGAATATATTGCGCCTGACTCGTCGTATGGTGAAATCTTTCTGTGAGAGTTTGTGCATGCAAGATAACACAAGCTTCCCACACCTAACCAGGATGAACAATGGCGCCATTAGAGTTGCTATTCGATGGGATGTTCTATGTTCTGGAAATGCAGGGCACGAGATTCAACGCATCACAACAGGTAGTAATCCTGGAAACTGTGTTTCAATCATGCGGTCATTGAACTACGTCATGAACGGAGAAGACACGTCACTGTTTCCGATTCTTCCCTCTGGCTTCACCATATCCAGGGATGCCAAACCAGATGTTCCTGAAGGACAATCTGGAGAAGTTGGCAAATCAGAAGGTTCGTTGGTCACTCTAATGTTTCAAATTTTGGCTTCTAGTCCATCTAGAATGAGCATGGTAGACATCGAATTTGTAAGTAATGTTAATGCACTTGTGACCTCAACAATAGAGCATATTAAAGATGCTTTGAATTGTTCCCATTCAAAGTAA 1716 0.4062 MANNGINPELLPAVPSTSSSSPLDTLRPTLLNQTVGTSRNQPILNHEEYIPSPSQHNIPAVNQDIFNHGHNQEIPDLALDQHVSSLTLTVTSPATVDPFRSQDDPLLISCLEYNIPALVTALDQNILSLASTSNQNNINLHVVEKQSQGLNPCLNVPSVTPTLDQDNPHPGQDISSILQDHTPSLDLDLDAILHILNSDVVSQPKTSENKDTENARMLKIANNAMEELMKLLSMNEPFWFRSLVDERFVLQRDCYQRIFQRSNSLNGPHARVESSKDSRVVKMSGTELVEMFLNSDKWADLFPTIVKKAETIEVLESGSLGNRNGALQLMNAEMHILSPLVPTREFSFLRYCKQIEAGVWTIGDVSIDSSTHEISNVSSSRRLPSGLLIQEIADGLCRVSKSPDSRRNILRLTRRMVKSFCESLCMQDNTSFPHLTRMNNGAIRVAIRWDVLCSGNAGHEIQRITTGSNPGNCVSIMRSLNYVMNGEDTSLFPILPSGFTISRDAKPDVPEGQSGEVGKSEGSLVTLMFQILASSPSRMSMVDIEFVSNVNALVTSTIEHIKDALNCSHSK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02819 571 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 479 566 IPR042160 -
Vian1g02819 571 Pfam START domain 220 399 IPR002913 GO:0008289
Vian1g02819 571 ProSiteProfiles START domain profile. 210 400 IPR002913 GO:0008289
Vian1g02819 571 MobiDBLite consensus disorder prediction 1 27 - -
Vian1g02819 571 SMART START_1 219 441 IPR002913 GO:0008289
Vian1g02819 571 Gene3D - 218 404 IPR023393 -
Vian1g02819 571 SUPERFAMILY Bet v1-like 213 400 - -
Vian1g02819 571 CDD START_ArGLABRA2_like 215 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02819 Vian-Chr1 44151572 44154571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02819 211 567 Homeobox Transcription Factor Family AT4G04890 28.226 4.44e-46 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02819 K09338 - gmx:100783586 375.17