Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02814 ATGCCACAAATAATGAGGTTTTCACCACTCGTAGTTGTGTTGGTTTTCTGTTTTTCTCCTATGCTGGTAGTCCTTGGTCTGGGCTCAGATCACACTACTTTGGGAGTGCTGTTGGAAGTGAAGAAGTCTTTTGTGAAAGACCCACGAAATGTTCTGAGTGATTGGACAGAGGATAACATTGACTACTGCAGTTGGAGAGGGGTGTCATGTGAATTGAACTCAGACTCAAACACAATTTCAAACTCTTTAGATGGTAACTCCATGCAAGTGGTGGGTCTCAATCTTTCTGACTCGTCACTCACCGGGTCAGTGTCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCACAGGTCCCATTCCACGTAATCTCTCCAACCTAACTTCCTTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCACATACCCGAAGAGTTCGGCTCGCTCAAGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTAACGGGAACGATTCCCGCGTCTCTCGCCAACCTGGTCAATTTGGTCAACCTTGGCTTGGCTTCCTGCGGACTCACCGGGTCTATTCCAAGGCAACTTGGTCAACTCAAGCTCATGGAGAATCTGATTCTGCAAGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACCGTCTTCACTGCAGCTAACAACAAACTCAATGGATCAATACCCATTGAACTGGGTCGACTCAGCAATCTGCAAATTCTCAACTTTGCCAACAACAGTATATCTGGGGAGATTCCGAGTCAACTCGGTAATATGAGTCAACTCGTTTACCTGAACTTCATGGGGAACCAGTTAGAGGGTACCATTCCTCCGTCTCTAGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCAATGAACAAGCTCAGTGGAGGAATGCCAGAGGAGTTGGGCAACTTGGGTGAGCTGGCTTATTTGGTTCTGTCTGGTAACAACCTTAATGGTGTCATACCAAGGACCATATGTTCCAATGCAACAAGTTTGGAGCACTTGATGTTGTCAGAAAGTGGACTTCATGGGGAGATTCCAGCTGAGTTGAGTCAATGCCAGCAACTGATGCAACTCGATTTGTCCAACAATGCACTCAACGGGTCCATACCTCTTGAGCTTTATGAGTTGCTGCGGTTAACTGATCTCTTGCTGAACAATAACAGCTTGGTTGGTTCCATCTCTCCCTCCATAGGGAACCTCAGTGGCTTGCAGACACTTGCTTTGTTTCACAATAACTTGGAGGGTGTTCTGCCTAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTGTATCTTTATGATAACCAATTGTCAGGGTCTATACCTACGGAGATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTCTTCGGAAACCATTTCAGTGGGGAAATTCCAGTCACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTAGTTGGTGAGATTCCAGCCACCTTGGGTAATTGTCATAAACTGAGCATTCTAGATTTAGCTGACAATCAGCTCTCAGGTGCAATTCCTGCAACGTTTGGATTCCTCAACGAATTACAGCAACTCATGATCTACAACAATTCCCTTGAAGGTAATCTCCCTCACCAACTGATCACCGTAAAAAACTTGACCAGAGTGAATCTTTCTAAGAACAAATTGAATGGTAGTATATCTGCGTTGTGTAGCTCTCAGTCATTTCTTTCTTTCGATGTTACTGACAATGAGTTTGAGGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGACTACGATTAGGTAACAACAACTTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCGTGAGCTGTCATTACTAGACCTCTCAGGAAATTCACTCATTGGACCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAGCAGTAACTTTCTTTTCGGACATATACCATTATGGCTTGGAAGTTTCTCTCAGTTGGAAGAGCTCAAACTCTCCTCCAATAACTTTTCTGGGCCACTTCCATTAGGCCTATTCAAATGTTCTAAGTTGCTTGTTCTCTCTCTAAATGACAACTCCGTGAATGGAACTCTCCCATCTGATATTGGTGAACTTGCAAACCTAAATGTCCTCAGACTTGAGCACAATAAGTTTTCTGGACCAATCCCTCTGGAGATAAGCAAATTGACCAAGCTTTATGAGCTCCGGCTCTCAAGAAATGGATTTAATGGTGAGATTCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAACCTCTCAGGTATCATCCCACTTTCTCTTGGGAAACAGTCAAAGTTAGAAGCTCTTGATCTTTCCCACAATCAACTAACTGGAGAAGTCCCTCCACAAATTGGGGAAATGAGCAGTTTGGGAAAGCTTGACCTCTCTTACAACAACCTTCAAGGAAAATTGGATAAGCAGTTTTCCGGTTGGCCAGACCAGGCATTTGAAGGAAACATACATCTTTGTGGAAGCCCTCTTGAGAACTGCCACAGAAATGACGACTCTGAAAATGCAGGCCTGAATGAATCAACAGTAGTGATAATCTCTTCCCTTTCAACTTTCGCTGCAATTGCACTTCTGATACTCGCAGTCCGAATCTTTTCCAAAAACAAGCAAGAATTTTGCAGGAAAGCCAGTGAAGTGAATTATGTTTACTCCTCTTCTTCTTCATCACAAGCACAGAGAAGACCACTGTTCCAACTAAATGCAACTGGAAATAGAGATTTCAGATGGGAAGACATCATGGATGCTACGAACAATCTAAGTGAGGACTTCATGATTGGTTCAGGCGGCTCAGGGAAAATCTACAAAGCTGAATTGGCATCTGGAGAGACTGTGGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTGGGGAGGATTAGGCACAGACATCTGGTGAAGCTAATAGGATATTGTAGCAACAGAAACAAAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTTTGGGATTGGCTTCACGGGAAACCGGCCAAGGAGAGCAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCTCAAGGAGTGGAATACCTGCATCACGATTGCGTCCCAAAGATCCTTCACAGGGACATCAAATCCAGCAATGTATTGCTAGACTCAAAAATGGAGGCGCACTTGGGAGATTTTGGACTGGCAAAAGCACTAACCGAGAACTATGACTCTAATACTAATACTGACTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCCCAACGGGCAGCAGAAAAAAGTGACGTTTACAGCATGGGAATAGTACTGATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAACTTTTGGAGCTGAGATGAACATGGTGAGATGGGTAGAAATGAACGTGGATATGCATGGTTTTACCAGTGAGGAATTGATAGATCCTGAACTGAAACCTCTTTTACCTGACGAAGAGTTTGCCGCATTCAAAGTGCTTGAGATAGCCTTGCAATGCACGAAAGCTACACCACACGAGAGGCCATCTTCGAGGAAAGCATGCGACCTTCTCCTCCATGTATTCAACAACAGGATGGTGAACTTTGAGAAGATGAATTTGGAGCATTGCAAATGA 3825 0.4363 MPQIMRFSPLVVVLVFCFSPMLVVLGLGSDHTTLGVLLEVKKSFVKDPRNVLSDWTEDNIDYCSWRGVSCELNSDSNTISNSLDGNSMQVVGLNLSDSSLTGSVSPSLGRLQNLLHLDLSSNSLTGPIPRNLSNLTSLESLLLFSNQLTGHIPEEFGSLKSLRVMRLGDNALTGTIPASLANLVNLVNLGLASCGLTGSIPRQLGQLKLMENLILQDNELMGPIPTELGNCSSLTVFTAANNKLNGSIPIELGRLSNLQILNFANNSISGEIPSQLGNMSQLVYLNFMGNQLEGTIPPSLAQLGNLQNLDLSMNKLSGGMPEELGNLGELAYLVLSGNNLNGVIPRTICSNATSLEHLMLSESGLHGEIPAELSQCQQLMQLDLSNNALNGSIPLELYELLRLTDLLLNNNSLVGSISPSIGNLSGLQTLALFHNNLEGVLPREIGMLGKLEILYLYDNQLSGSIPTEIGNCSSLQMIDFFGNHFSGEIPVTIGRLKELNFLHLRQNELVGEIPATLGNCHKLSILDLADNQLSGAIPATFGFLNELQQLMIYNNSLEGNLPHQLITVKNLTRVNLSKNKLNGSISALCSSQSFLSFDVTDNEFEGEIPSQMGNSPSLERLRLGNNNFSGEIPRTLGKIRELSLLDLSGNSLIGPIPAELSLCNKLAYIDLSSNFLFGHIPLWLGSFSQLEELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSVNGTLPSDIGELANLNVLRLEHNKFSGPIPLEISKLTKLYELRLSRNGFNGEIPAEIGKLQNLQIILDLSYNNLSGIIPLSLGKQSKLEALDLSHNQLTGEVPPQIGEMSSLGKLDLSYNNLQGKLDKQFSGWPDQAFEGNIHLCGSPLENCHRNDDSENAGLNESTVVIISSLSTFAAIALLILAVRIFSKNKQEFCRKASEVNYVYSSSSSSQAQRRPLFQLNATGNRDFRWEDIMDATNNLSEDFMIGSGGSGKIYKAELASGETVAVKKISSKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKAGWNLLIYEYMENGSVWDWLHGKPAKESKVKRSLDWETRFKIAVGLAQGVEYLHHDCVPKILHRDIKSSNVLLDSKMEAHLGDFGLAKALTENYDSNTNTDSNSWFAGSYGYIAPEYAYSQRAAEKSDVYSMGIVLMELVSGKMPTNETFGAEMNMVRWVEMNVDMHGFTSEELIDPELKPLLPDEEFAAFKVLEIALQCTKATPHERPSSRKACDLLLHVFNNRMVNFEKMNLEHCK 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02814 1274 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Vian1g02814 1274 Gene3D Transferase(Phosphotransferase) domain 1 1047 1268 - -
Vian1g02814 1274 SMART serkin_6 967 1259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02814 1274 Pfam Leucine rich repeat N-terminal domain 36 70 IPR013210 -
Vian1g02814 1274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1097 1109 IPR008271 GO:0004672|GO:0006468
Vian1g02814 1274 SMART LRR_typ_2 496 520 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 424 447 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 255 279 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 735 759 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 303 326 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 159 183 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 687 711 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 111 134 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 135 158 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 783 807 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 832 863 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 448 472 IPR003591 -
Vian1g02814 1274 SMART LRR_typ_2 327 351 IPR003591 -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 658 753 IPR032675 -
Vian1g02814 1274 Pfam Protein kinase domain 972 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02814 1274 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 493 1254 - -
Vian1g02814 1274 FunFam Leucine-rich repeat receptor-like protein kinase 1047 1271 - -
Vian1g02814 1274 Gene3D Phosphorylase Kinase; domain 1 927 1046 - -
Vian1g02814 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 296 395 - -
Vian1g02814 1274 FunFam Uncharacterized protein 396 489 - -
Vian1g02814 1274 ProSiteProfiles Protein kinase domain profile. 967 1259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02814 1274 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 209 280 - -
Vian1g02814 1274 SMART LRR_sd22_2 783 805 - -
Vian1g02814 1274 SMART LRR_sd22_2 111 137 - -
Vian1g02814 1274 SMART LRR_sd22_2 303 329 - -
Vian1g02814 1274 SMART LRR_sd22_2 400 426 - -
Vian1g02814 1274 SMART LRR_sd22_2 448 474 - -
Vian1g02814 1274 SMART LRR_sd22_2 255 281 - -
Vian1g02814 1274 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 204 - -
Vian1g02814 1274 SUPERFAMILY L domain-like 708 857 - -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 568 657 IPR032675 -
Vian1g02814 1274 ProSitePatterns Protein kinases ATP-binding region signature. 973 996 IPR017441 GO:0005524
Vian1g02814 1274 SUPERFAMILY L domain-like 152 489 - -
Vian1g02814 1274 PRINTS Leucine-rich repeat signature 832 845 - -
Vian1g02814 1274 PRINTS Leucine-rich repeat signature 811 824 - -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 400 567 IPR032675 -
Vian1g02814 1274 Pfam Leucine rich repeat 761 821 IPR001611 GO:0005515
Vian1g02814 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 927 1046 - -
Vian1g02814 1274 SUPERFAMILY L domain-like 466 753 - -
Vian1g02814 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 587 879 - -
Vian1g02814 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 490 586 - -
Vian1g02814 1274 SUPERFAMILY L domain-like 38 209 - -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 350 399 IPR032675 -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 208 280 IPR032675 -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 281 349 IPR032675 -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 33 203 IPR032675 -
Vian1g02814 1274 Gene3D Ribonuclease Inhibitor 754 876 IPR032675 -
Vian1g02814 1274 SUPERFAMILY Protein kinase-like (PK-like) 949 1254 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02814 Vian-Chr1 44019751 44023678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02814 36 756 Receptor kinase-like Gene Family AT1G17750 35.262 8.23e-103 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian1g02814 Pkinase 7.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02814 - - gmx:100801889 2090.46