Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02806 ATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCCGCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGTATACTATTGTATGTAGCATTGCAACTTTCCGATATATGCTTTTTGCATATCTGAAAGAGCAAGCATTGGTTATCAAGAATGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAACTGTTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACAGCTGGTGGACCATCTGTATCTGCACCCCCATCACAGATTCCAACAGCATCTGCAACACATGCATCTTATAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTTCAGTTACCAGCCAAGGAGCCGAGAATCCAGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAATATACTCAGGAAAGGAAAACTTCCCAAGGAAGTGTTGCAAAGTCAGGTGGGGGCCCTGAACCTAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGCTACCACCCTCTGTAGGATTTGATAATGAGGCTTCTAGATTTAAGACAAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAGCCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGACAATGATGAGTTTCTCAGAGAATCGTCTCCTGGGTTCGATGTCCTTGTAGCCGATGAACTTAGGAATTCTGATTACTATCATGGGGAAGATGAGTTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACTCTTTGAACGAATATGATTTAGGGCATTCTGGTGAATATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGCCCCAAAGTTATGAGTCATATGATCACACGCAGGAACCATATCTGTGGGAGCAGCACAGGAAGGCTTCGGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGTAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCACTTATCCAAGCGCAGAAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGTAGAATAAAACTTCCTGCAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAATTAGAGGCAGGTTGTTGCCTGGAAGGTTGCAGGCCACTCAGCAAGGAAGGATCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCAAAGGATGGATTAATGGGGAGAGAACTAATAGGTGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAGCCACAACCACTGGGAAAGAGAGGAACTTTAAGAGATGATCACCCACAGTCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGACCTGGAGGCAGAGCTGATGCAGACTCGGGCAATGGCAAATCATCTAATATTAAAAGTGAAGAAGTTACCAATGGCTCAGATCCTACCCAGGTCACGAACACACAAAACGGTGTGCTGTCTGAGATCAAGGAATATGTCAACAATCAAAATAATGAAGAATCCAAGGTTGAGGTCACTGATGCAGTTGGAGGAGAGACTGGTGCAACTGATGGTCAATACGAGGAGGGAATGTACGAAGAAGCCGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAGGAGGAAGAGTACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2211 0.45 MVTPQPQLQVQPQQPAPSSQDEALKRNTDCVYFLASPLTCKKYTIVCSIATFRYMLFAYLKEQALVIKNGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPPSQIPTASATHASYNSTKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVSVTSQGAENPGFKKPFGTNEKYTQERKTSQGSVAKSGGGPEPKPAPKIESAPKRNMFELEKEMLPPSVGFDNEASRFKTSSPPVTNGPTVVRSSRLHQARVPDDHNFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGPDERNLDSLNEYDLGHSGEYGLAADIDRERFRVPQSYESYDHTQEPYLWEQHRKASAHLDRRTRRRSGSPENAEVSDLRHHLSKRRKVNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNESSLGNRFRGRIKLPANGGADQLERDDRGRIRGRLLPGRLQATQQGRIHDRMRGRLQDDERRNSKDGLMGRELIGGDRSDFAGPKSLAELKNGRNPENREPQPLGKRGTLRDDHPQSEDDLQFDGPKPLSEILKEKKRGGPGGRADADSGNGKSSNIKSEEVTNGSDPTQVTNTQNGVLSEIKEYVNNQNNEESKVEVTDAVGGETGATDGQYEEGMYEEAGEDQYYEGDDQREGDYEYEQGDEGYYEYEQGEEGENQEEEYMDEEDGDDFAKKIGVIHS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02806 736 MobiDBLite consensus disorder prediction 390 413 - -
Vian1g02806 736 ProSiteProfiles Zinc finger C3H1-type profile. 144 171 IPR000571 GO:0046872
Vian1g02806 736 MobiDBLite consensus disorder prediction 548 599 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 672 700 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 706 723 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 256 276 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 250 301 - -
Vian1g02806 736 ProSiteProfiles Zinc finger C3H1-type profile. 82 108 IPR000571 GO:0046872
Vian1g02806 736 MobiDBLite consensus disorder prediction 605 652 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 706 725 - -
Vian1g02806 736 SMART c3hfinal6 84 107 IPR000571 GO:0046872
Vian1g02806 736 SMART c3hfinal6 144 170 IPR000571 GO:0046872
Vian1g02806 736 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 734 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 476 490 - -
Vian1g02806 736 Gene3D - 68 112 - -
Vian1g02806 736 Pfam RNA-binding, Nab2-type zinc finger 149 169 - -
Vian1g02806 736 Pfam RNA-binding, Nab2-type zinc finger 87 106 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 280 301 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 431 446 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 390 700 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 186 233 - -
Vian1g02806 736 Gene3D - 134 213 - -
Vian1g02806 736 MobiDBLite consensus disorder prediction 502 529 - -
Vian1g02806 736 SUPERFAMILY CCCH zinc finger 145 169 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02806 Vian-Chr1 43853126 43856530 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g02806 zf-CCCH_2 0.022 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02806 - - gmx:102669253 1061.6