Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02757 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGAAGTAGCCAGGTGGCATCCAATGTCTCCTTGCATGAAGCATCTTATGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTGACAAAGGATGAAACTGATCCAGGTTCTGTTACCCTTGACTTGACACTCAACTTCAATTCCAGTGATAGTGAGTTGAAAGGTTCTAGTGATGCTAGCAGTGAAGTGGGAGCTGAACCTCCTGCTTCAGCATCAGCAACTCCCAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGTTCGCAGGCATTAGGAGGCCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCATTGAGAATGGGAATGTTCACTGAGAGGTACACAAGTTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGTCTTGAAGCTCATTCTGCAATGCACCAAAGACACGTCTCATCCTCACTGAGAACTCCTGATATGAGAGCCGCTGCAAGATTTGAGAGAAACCATTTTGGATCGCTGGTTTTCATGGAAGATGATGATGTTGGATTGTTTTGGCCTGGAAGTTTCAGACAGGTAGACCAAGGAGCTGGTGTTACTGAAGGACATGTTCAAAGCTCAAATCCCAGTCTTGTTCCAATAGTGCCTCCTCCACCACAAGTTTCTGCTTCTCCGGATCTCACATTGAAGCTTTGA 738 0.4539 MMTPNLNLEPENHSEGSSQVASNVSLHEASYDLTKGSTTTSSCLTKDETDPGSVTLDLTLNFNSSDSELKGSSDASSEVGAEPPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRALRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHQRHVSSSLRTPDMRAAARFERNHFGSLVFMEDDDVGLFWPGSFRQVDQGAGVTEGHVQSSNPSLVPIVPPPPQVSASPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02757 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Vian1g02757 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 167 IPR044246 GO:0009788
Vian1g02757 245 MobiDBLite consensus disorder prediction 66 89 - -
Vian1g02757 245 MobiDBLite consensus disorder prediction 211 245 - -
Vian1g02757 245 FunFam Zinc finger protein 2 70 140 - -
Vian1g02757 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vian1g02757 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Vian1g02757 245 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g02757 245 Gene3D Classic Zinc Finger 71 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02757 Vian-Chr1 42518375 42519112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02757 88 245 C2H2 Transcription Factor Family AT1G66140 46.196 1.01e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g02757 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02757 - - gmx:100775305 423.705